1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
TGATGGCTTGTATGGAAGTCATCTACATGTTTATAGTTGGCCAGGAGGTGAAATAAAACAATTAATTGACCTTGGACCGACTGGTCTCTTACCTTTGGAGgtaacatatctctttcaaaatatgatctgtatttttctttcaggtgatataaatggaaggaagtatcgtgaccggttgttgttataacttatatgtggttgcag
species | Arabidopsis thaliana |
transcript | AT4G14030.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: ATTGACCTTGGACCGACTGGTCTCTTACCTTTGGAG ATTAGATTCTTGCATGATCCATCTAAAGATACAGGGTTTGTTGGGAGTGCCEST: gi|164102871|gb|ES158992.1|ES158992
genomic: ATTGACCTTGGACCGACTGGTCTCTTACCTTTGGAGgtaacatatc ... gtggttgcagATTAGATTCTTGCATGATCCATCTAAAGATACAGGGTTTGTTGGGAGTGCC
EST: AAATGAAACAATTAATTGACCTTGGACCGACTGGTCTCTTACCTTTGGAG ATTAGATTCTTGCATGATCCGTCTAAAGATACAGGGTTTGTTGGGAGTGCCEST: gi|125069767|gb|EL135427.1|EL135427
genomic: AAATAAAACAATTAATTGACCTTGGACCGACTGGTCTCTTACCTTTGGAGgtaacatatc ... gtggttgcagATTAGATTCTTGCATGATCCATCTAAAGATACAGGGTTTGTTGGGAGTGCC
EST: AATAAAACAATTAATTGACCTTGGACCGACTGGTCTACTTACCTTTGGAG ATTAGATTCTTGCATGATCCATEST: gi|125217694|gb|EL231777.1|EL231777
genomic: AATAAAACAATTAATTGACCTTGGACCGACTGGTCT-CTTACCTTTGGAGgtaacatatc ... gtggttgcagATTAGATTCTTGCATGATCCAT
EST: ACCGACTGGTCTCTTACCTTTGGAG ATTAGATTCTTGCATGATCCATCTAAAGATACAGGGTTTGTTGGGAGTGCCEST: gi|125275875|gb|EL289960.1|EL289960
genomic: ACCGACTGGTCTCTTACCTTTGGAGgtaacatatc ... gtggttgcagATTAGATTCTTGCATGATCCATCTAAAGATACAGGGTTTGTTGGGAGTGCC
EST: TCTCTTACCTTTGGAG ATTAGATTCTTGCATGATCCATCTAAAGATACAGGGTTTGTTGGGAGTGCCEST: gi|47831973|gb|CK121657.1|CK121657
genomic: TCTCTTACCTTTGGAGgtaacatatc ... gtggttgcagATTAGATTCTTGCATGATCCATCTAAAGATACAGGGTTTGTTGGGAGTGCC
EST: AAATAAAACAATTAATTGACCTTGGACCGACTGGTCTCTTACCTTTGGAG ATTAGATTCTTGCATGATCCATCTAAAGATACAGGGTTTGTTGGGAGTGCCEST: gi|125082851|gb|EL143619.1|EL143619
genomic: AAATAAAACAATTAATTGACCTTGGACCGACTGGTCTCTTACCTTTGGAGgtaacatatc ... gtggttgcagATTAGATTCTTGCATGATCCATCTAAAGATACAGGGTTTGTTGGGAGTGCC
EST: AAAACAATTAATTGACCTTGGACCGACTGGTCTCTTACCTTTGGAG ATTAGATTCTTGCATGATCCATCTAAAGATACAGGGTTTGTTGGGAGTGCCEST: gi|125070108|gb|EL135644.1|EL135644
genomic: AAAACAATTAATTGACCTTGGACCGACTGGTCTCTTACCTTTGGAGgtaacatatc ... gtggttgcagATTAGATTCTTGCATGATCCATCTAAAGATACAGGGTTTGTTGGGAGTGCC
EST: AAATAAAACAATTAATTGACCTTGGACCGACTGGTCTCTTACCTTTGGAG ATTAGATTCTTGCATGATCCATCTAAAGATACAGGG
genomic: AAATAAAACAATTAATTGACCTTGGACCGACTGGTCTCTTACCTTTGGAGgtaacatatc ... gtggttgcagATTAGATTCTTGCATGATCCATCTAAAGATACAGGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGATGGCTTGTATGGAAGTCATCTACATGTTTATAGTTGGCCAGGAGGTGAAATAAAACAATTAATTGACCTTGGACCGACTGGTCTCTTACCTTTGGAGgtaacatatctctttcaaaatatgatctgtatttttctttcaggtgatataaatggaaggaagtatcgtgaccggttgttgttataacttatatgtggttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG