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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTGATACTTGGGTATGCAAAACTGACCTCGAGTTTGAAGCCAAAACATGAATACGTACCATGGGTCACACTCAACGGCAAACCACTCTATGACgtatatataactcttcctttcattttcattttaacgaattttaaattaatatctttattttggggatgcag

Basic information

species Arabidopsis thaliana
transcript AT4G12890.1
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164195717|gb|ES102644.1|ES102644
EST:     CACTCTATGAC                         AATTACCATAATTTGGTCGCACAAGTCTGCAAAGCGTACAAAGGAAAGGAT
genomic: CACTCTATGACgtatatataa ... ggggatgcagAATTACCATAATTTGGTCGCACAAGTCTGCAAAGCGTACAAAGGAAAGGAT
EST: gi|164232012|gb|ES129162.1|ES129162
EST:     AACATGAATACGTACCATGGGTCACACTCAACGGCAAACCACTCTATGAC                         AATTACCATAATTTGGTCGCACAAGTCTGCAAAGCGTACAAAGGA
genomic: AACATGAATACGTACCATGGGTCACACTCAACGGCAAACCACTCTATGACgtatatataa ... ggggatgcagAATTACCATAATTTGGTCGCACAAGTCTGCAAAGCGTACAAAGGA
EST: gi|164065561|gb|ES089933.1|ES089933
EST:     CAAACCACTCTATGAC                         AATTACCATAATTTGGTTCGCACAAGTCTGCAAAGCGTACAAAGGAAAGGA
genomic: CAAACCACTCTATGACgtatatataa ... ggggatgcagAATTACCATAATTTGG-TCGCACAAGTCTGCAAAGCGTACAAAGGAAAGGA
EST: gi|164211229|gb|ES035275.1|ES035275
EST:     CAAACCACTCTATGAC                         AATTACCATAATTTGGTCGCACAAGTCTGCAAAGCGTACAAAGGAAAAGGA
genomic: CAAACCACTCTATGACgtatatataa ... ggggatgcagAATTACCATAATTTGGTCGCACAAGTCTGCAAAGCGTACAAAGGAAA-GGA
EST: gi|164220841|gb|ES164203.1|ES164203
EST:     GTCACACTCAACGGCAAACCACTCTATGAC                         AATTACCATAATTTGGTCGCACAAGTCTGCAAAGCGTACAAAGG
genomic: GTCACACTCAACGGCAAACCACTCTATGACgtatatataa ... ggggatgcagAATTACCATAATTTGGTCGCACAAGTCTGCAAAGCGTACAAAGG
EST: gi|164171408|gb|EL978747.1|EL978747
EST:     AACATGAATACGTACCATGGGTCACACTCAACGGCAAACCACTCTATGAC                         AATTACCATAATTTGGTCGCACAAGTCTGCAAAGCGTACAAAG
genomic: AACATGAATACGTACCATGGGTCACACTCAACGGCAAACCACTCTATGACgtatatataa ... ggggatgcagAATTACCATAATTTGGTCGCACAAGTCTGCAAAGCGTACAAAG
EST: gi|164174361|gb|ES100754.1|ES100754
EST:     ACGTAACCATGGGTCACACTCAACGGCAAACCACTCTATGAC                         AATTACCATAATTTGGTCGCACAAGTC
genomic: ACGT-ACCATGGGTCACACTCAACGGCAAACCACTCTATGACgtatatataa ... ggggatgcagAATTACCATAATTTGGTCGCACAAGTC
EST: gi|164144639|gb|ES050330.1|ES050330
EST:     AACNTGAATACGTACCATGGGTCACACTCAACGGCAAACCACTCTATGAC                         AATTACCATAATTTGGTCGCACAAGTCTGCAAAGCGTACAAAGGAAAGGA
genomic: AACATGAATACGTACCATGGGTCACACTCAACGGCAAACCACTCTATGACgtatatataa ... ggggatgcagAATTACCATAATTTGGTCGCACAAGTCTGCAAAGCGTACAAAGGAAAGGA
EST: gi|164223903|gb|ES128923.1|ES128923
EST:     GTACCATGGGTCACACTCAACGGCAAACCACTCTATGAC                         AATTACCATAATTTGGTCGCACAAGTCTGCAAAG
genomic: GTACCATGGGTCACACTCAACGGCAAACCACTCTATGACgtatatataa ... ggggatgcagAATTACCATAATTTGGTCGCACAAGTCTGCAAAG
EST: gi|164235113|gb|EL973487.1|EL973487
EST:     GAATACGTACCATGGGTCACACTCAACGGCAAACCACTCTATGAC                         AATTACCATAATTTGGTCGCACAAGTCTGCAAAGCGTACAAAGGAAAGGAT
genomic: GAATACGTACCATGGGTCACACTCAACGGCAAACCACTCTATGACgtatatataa ... ggggatgcagAATTACCATAATTTGGTCGCACAAGTCTGCAAAGCGTACAAAGGAAAGGAT
EST: gi|86079855|gb|DR375612.1|DR375612
EST:     AACATGAATACGTACCATGGGTCACACTCAACGGCAAACCACTCTATGAC                         AATTACCATAATTTGGTCGCACAAGTCTGCAAAGCGTACAAAGGAAAGGAT
genomic: AACATGAATACGTACCATGGGTCACACTCAACGGCAAACCACTCTATGACgtatatataa ... ggggatgcagAATTACCATAATTTGGTCGCACAAGTCTGCAAAGCGTACAAAGGAAAGGAT
EST: gi|164209148|gb|ES058741.1|ES058741
EST:     TACCATGGGTCACACTCAACGGCAAACCACTCTATGAC                         AATTACCATAATTTGGTCGCACAAGTCTGCAAAGCGTACAAAGGAAAGGAT
genomic: TACCATGGGTCACACTCAACGGCAAACCACTCTATGACgtatatataa ... ggggatgcagAATTACCATAATTTGGTCGCACAAGTCTGCAAAGCGTACAAAGGAAAGGAT
EST: gi|164179807|gb|ES020967.1|ES020967
EST:     ACATGAATTACGTACCATGGGTCACACTCAACGGCAAACCACTCTATGAC                         AATTACCATAATTTGGTCGCACAAGTCTGC
genomic: ACATGAA-TACGTACCATGGGTCACACTCAACGGCAAACCACTCTATGACgtatatataa ... ggggatgcagAATTACCATAATTTGGTCGCACAAGTCTGC
EST: gi|164053170|gb|ES001208.1|ES001208
EST:     GGTCACACTCAACGGCAAACCACTCTATGAC                         AATTACCATAATTTGGTCGCACAAGTCTGCAAAGCGTACAAAGGAAAGGAA
genomic: GGTCACACTCAACGGCAAACCACTCTATGACgtatatataa ... ggggatgcagAATTACCATAATTTGGTCGCACAAGTCTGCAAAGCGTACAAAGGAAAGGA-
EST: gi|164068024|gb|ES138855.1|ES138855
EST:     ACGGCAAACCACTCTATGAC                         AATTACCATAATTTGGTCGCACAAGTCTGCAAAGCGTACAGAGGAA-GGAT
genomic: ACGGCAAACCACTCTATGACgtatatataa ... ggggatgcagAATTACCATAATTTGGTCGCACAAGTCTGCAAAGCGTACAAAGGAAAGGAT
EST: gi|164221648|gb|ES039620.1|ES039620
EST:     ACCATGGGTCACACTCAACGGCAAACCACTCTATGAC                         AATTACCATAATTTGGTCGCACAAGTCTGC
genomic: ACCATGGGTCACACTCAACGGCAAACCACTCTATGACgtatatataa ... ggggatgcagAATTACCATAATTTGGTCGCACAAGTCTGC
EST: gi|164182700|gb|EL969818.1|EL969818
EST:     AACATGAATACGTACCATGGGTCACACTCAACGGCAAACCACTCTATGAC                         AATTACCATAATTTGGTCGCACAAG
genomic: AACATGAATACGTACCATGGGTCACACTCAACGGCAAACCACTCTATGACgtatatataa ... ggggatgcagAATTACCATAATTTGGTCGCACAAG
EST: gi|164116080|gb|ES146171.1|ES146171
EST:     AACATGAATACGTACCATGGGTCACACTCAACGGCAAACCACTCTATGAC                         AATTACCATAATTTGGTCGCACAAGTC
genomic: AACATGAATACGTACCATGGGTCACACTCAACGGCAAACCACTCTATGACgtatatataa ... ggggatgcagAATTACCATAATTTGGTCGCACAAGTC
EST: gi|164147773|gb|ES093645.1|ES093645
EST:     AACATGAATACGTACCATGGGTCACACTCAACGGCAAACCACTCTATGAC                         AATTACCATAATTTGGTCGC
genomic: AACATGAATACGTACCATGGGTCACACTCAACGGCAAACCACTCTATGACgtatatataa ... ggggatgcagAATTACCATAATTTGGTCGC
EST: gi|164031982|gb|ES131199.1|ES131199
EST:     CACTCAACGGCAAACCACTCTATGAC                         AATTACCATAATTTGGTCGCACAAGTCTGCAAAGCGTACAAAGGAAAGGAT
genomic: CACTCAACGGCAAACCACTCTATGACgtatatataa ... ggggatgcagAATTACCATAATTTGGTCGCACAAGTCTGCAAAGCGTACAAAGGAAAGGAT
EST: gi|164198046|gb|ES084027.1|ES084027
EST:     ACATGAGTACGTACCATGGGTCACACTCAACGGCAAACCAACTCTATGAC                         AATTACCATAATTTGGTCGCACAAGTCTGCAAAGCGTACAAAGGAAAGGAT
genomic: ACATGAATACGTACCATGGGTCACACTCAACGGCAAACC-ACTCTATGACgtatatataa ... ggggatgcagAATTACCATAATTTGGTCGCACAAGTCTGCAAAGCGTACAAAGGAAAGGAT
EST: gi|163984989|gb|ES012226.1|ES012226
EST:     AACATGAATACGTACCATGGGTCACACTCAACGGCAAACCACTCTATGAC                         AATTACCATAATTTGGTCGCACAAGTCTGCAAAGCGTAC
genomic: AACATGAATACGTACCATGGGTCACACTCAACGGCAAACCACTCTATGACgtatatataa ... ggggatgcagAATTACCATAATTTGGTCGCACAAGTCTGCAAAGCGTAC
EST: gi|164020898|gb|ES012404.1|ES012404
EST:     ACATGAATACGTACCATGGGTCACACTCAACGGCAAACCACTACTATGAC                         AATTACCATAATTTGGTCGCACAAGTCTGCAAAGCGTACAAAGGAAA
genomic: ACATGAATACGTACCATGGGTCACACTCAACGGCAAACCACT-CTATGACgtatatataa ... ggggatgcagAATTACCATAATTTGGTCGCACAAGTCTGCAAAGCGTACAAAGGAAA
EST: gi|164043567|gb|ES070776.1|ES070776
EST:     AACATGAATACGTACCATGGGTCACACTCAACGGCAAACCACTCTATGAC                         AATTACCATAATTTGGTCGCACAAGTCTGCAAAGCGTACAAAGGAAA
genomic: AACATGAATACGTACCATGGGTCACACTCAACGGCAAACCACTCTATGACgtatatataa ... ggggatgcagAATTACCATAATTTGGTCGCACAAGTCTGCAAAGCGTACAAAGGAAA
EST: gi|164004763|gb|ES158293.1|ES158293
EST:     AACGTGAATACGTACCATGGGTCACACTCAACGGCAAACCACTCTATGAC                         AATTACCATAATT
genomic: AACATGAATACGTACCATGGGTCACACTCAACGGCAAACCACTCTATGACgtatatataa ... ggggatgcagAATTACCATAATT
EST: gi|164203842|gb|ES170576.1|ES170576
EST:     GGTCACACTCAACGGCAAACCACTCTATGAC                         AATTACCATAATTTGGTCGCACAAGTCTGCAAAGCGTACAAAGG
genomic: GGTCACACTCAACGGCAAACCACTCTATGACgtatatataa ... ggggatgcagAATTACCATAATTTGGTCGCACAAGTCTGCAAAGCGTACAAAGG
EST: gi|164196156|gb|ES167818.1|ES167818
EST:     AACATGAATACGTACCATGGGTCACACTCAACGGCAAACCACTCTATGAC                         AATTACCATAATTTGGTCGCACAAGTCT
genomic: AACATGAATACGTACCATGGGTCACACTCAACGGCAAACCACTCTATGACgtatatataa ... ggggatgcagAATTACCATAATTTGGTCGCACAAGTCT
EST: gi|164220457|gb|ES035855.1|ES035855
EST:     AACATGAATACGTACCATGGGTCACACTCAACGGCAAACCACTCTATGAC                         AATTACCATAATTTGGTCGCACAAGTCTGCAAAGCGTACAAAGGAAAGGA
genomic: AACATGAATACGTACCATGGGTCACACTCAACGGCAAACCACTCTATGACgtatatataa ... ggggatgcagAATTACCATAATTTGGTCGCACAAGTCTGCAAAGCGTACAAAGGAAAGGA
EST: gi|164193479|gb|ES133758.1|ES133758
EST:     TCAACGGCAAACCACTCTATGTACT                         AATTACCATAATTTGGTCGCACAAGTCTGCAAAGCGTACAAAGGAAAGGA
genomic: TCAACGGCAAACCACTCTATG-AC-gtatatataa ... ggggatgcagAATTACCATAATTTGGTCGCACAAGTCTGCAAAGCGTACAAAGGAAAGGA
EST: gi|164193479|gb|ES133758.1|ES133758
EST:     TCAACGGCAAACCACTCTATGTACT                         AATTACCATAATTTGGTCGCACAAGTCTGCAAAGCGTACAAAGGAAAGGA
genomic: TCAACGGCAAACCACTCTATG-AC-gtatatataa ... ggggatgcagAATTACCATAATTTGGTCGCACAAGTCTGCAAAGCGTACAAAGGAAAGGA
EST: gi|163979928|gb|ES137933.1|ES137933
EST:     AACATGAATACGTACCATGGGTCACACTCAACGGCAAACCACTCTATGAC                         AATTACCATAATTTGGTCG
genomic: AACATGAATACGTACCATGGGTCACACTCAACGGCAAACCACTCTATGACgtatatataa ... ggggatgcagAATTACCATAATTTGGTCG
EST: gi|164048438|gb|ES045432.1|ES045432
EST:     TGAATACGTACCATGGGTCACACTCAACGGCAAACCACTCTATG-C                         AATTACCATAATTTGGTCGCACAAGTCTGCAAAGCGTACAAAGGAAAGGAT
genomic: TGAATACGTACCATGGGTCACACTCAACGGCAAACCACTCTATGACgtatatataa ... ggggatgcagAATTACCATAATTTGGTCGCACAAGTCTGCAAAGCGTACAAAGGAAAGGAT
EST: gi|164154872|gb|EL984997.1|EL984997
EST:     AACNTGAATACGTACCATGGGTCACACTCAACGGCAAACCACTCTATGAC                         AATTACCATAATTTGGTCGCACAAGTCTGCAAAGCGTACAAAG
genomic: AACATGAATACGTACCATGGGTCACACTCAACGGCAAACCACTCTATGACgtatatataa ... ggggatgcagAATTACCATAATTTGGTCGCACAAGTCTGCAAAGCGTACAAAG
EST: gi|164095594|gb|ES017648.1|ES017648
EST:     AACATGAATACGTACCATGGGTCACACTCAACGGCAAACCACTCTATGAC                         AATTACCATAATTTAGGTACGCACAAGTCTGCAAAGCGTACAAAGGAAA
genomic: AACATGAATACGTACCATGGGTCACACTCAACGGCAAACCACTCTATGACgtatatataa ... ggggatgcagAATTACCATAATTT-GGT-CGCACAAGTCTGCAAAGCGTACAAAGGAAA
EST: gi|164199506|gb|ES069426.1|ES069426
EST:     AACATGAATACGTACCATGGGTCACACTCAACGGCAAACCACTCTATGAC                         AATTACCATAATTTGGTCG
genomic: AACATGAATACGTACCATGGGTCACACTCAACGGCAAACCACTCTATGACgtatatataa ... ggggatgcagAATTACCATAATTTGGTCG