Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGCTCAAGCAAAGAAGAAAAAGATTGCTGTATTTCTAGATTATGATGGTACTCTTTCTCCAATAGTTGATGATCCTGATCGTGCCATCATGTCTGATGCAgtaataaacgcaaaccttttgtctattaccttactctgttctgttttttgtgtggcttatagtatgatgctaaaaagattgttttttcttttgatctttcag

Basic information

species Arabidopsis thaliana
transcript AT4G12430.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G12430.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA17G14780.1 (Glycine max), 5'ss of exon 2
AGCTCAAGCAAAGAAGAAAAAGATTGCTGTATTTCTAGATTATGATGGTACTCTTTCTCCAATAGTTGATGATCCTGATCGTGCCATCATGTCTGATGC----Agtaataaacgcaaaccttttgtctattaccttactctgttc---------tgttttttgtgtggcttatagtatga-tgctaaaaagattgttttttcttttgatctttcag-----------
 |  |  |||| | | || ||||||||  | ||||||||||||||||| || ||||| |||||||| ||||||||  || ||||| | ||||||||  |    ||||||| |  |     | |  | |  || ||||   |  |             || || | | | | ||||| | | | |||       | ||| || || |  | | |||            
TGACCTTGCAATGGATAAGAAGATTGCAATGTTTCTAGATTATGATGGCACACTTTCACCAATAGTAGATGATCCGAATTGTGCCTTTATGTCTGAATCTgtaagtaatacatactggattgtcatattatatcttatattagttaaattaagtcaattcttctttagttcatagtgtaaatactatcttccatttttatttttgttctttctcaaaacatgtttag

upper sequence: AT4G12430.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: Vv11s0037g00720.t01 (Vitis vinifera), 5'ss of exon 2
AGCTCAAGCAAAGAAGAAAAAGATTGCTGTATTTCTAGATTATGATGGTACTCTTTCTCCAATAGTTGATGATCCTGATCGTGCCATCATGTCTGATGCAgtaata-aacgcaaaccttttgtc-tat-taccttactctgttctgttttttgtgtggct-tatagt-atgatgc---taaaaagattgttttttcttttgatctttcag-----
                     ||| |   | ||||| ||||||||||| |||||||||||| | ||||||| |||||| |||||  | |||||||||||  ||||| || |     |||| ||  ||| | |       | ||   ||   | |  | |  |||  | |   |||   |||| |  ||||| |    | |||||  | |      
---------------------GATAGTAATGTTTCTGGATTATGATGGGACTCTTTCTCCAGTTGTTGATGGTCCTGACCGTGCTCTGATGTCTGATGCTATAATAGAATGTTTCTCTTTAgtagtatgtgcaaagagttctttccttccctttccgaccctatgttgacattgcatttaaataatttgttgtcatatgtgatcaattataaaag

upper sequence: AT4G12430.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: Vv02s0154g00110.t01 (Vitis vinifera), 5'ss of exon 2
AGCTCAAGCAAAGAAGAAAAAGATTGCTGTATTTCTAGATTATGATGGTACTCTTTCTCCAATAGTTGATGATCCTGATCGTGCCATCATGTCTGATGCAgtaataaacgcaaaccttttgtctattaccttactctgttctgttttttgtgtggcttatagtatgatgctaaaaagattgttttttcttttgatctttcag
|  | | ||| | |  || ||||| ||  | ||||| ||||||||||| |||||||||||||| |||||||||||||| |||||| | ||||||||||| |||| |||     ||   ||     |      |    ||||| ||  ||   |  |  |  ||||| || ||     |||   |  | | |||     ||||
AAGTTATGCACAAAGCAAGAAGATAGCAATGTTTCTGGATTATGATGGGACTCTTTCTCCAATTGTTGATGATCCTGACCGTGCCCTGATGTCTGATGCTgtaagaaattgttactcattagtagtatgtgcaaagagttct-ttccttccctttccaaccgtatgttgatattgcaattaaataatttgttg-----tcag

upper sequence: AT4G12430.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: Vv00s0233g00030.t01 (Vitis vinifera), 5'ss of exon 2
AGCTCAAGCAAAGAAGAAAAAGATTGCTGTATTTCTAGATTATGATGGTACTCTTTCTCCAATAGTTGATGATCCTGATCGTGCCATCATGTCTGATGCAgtaataaacgcaaaccttttgtctattaccttactctgttctgttttttgtgtggcttatagtatgatgctaaaaagattgttttttcttttgatctttcag
|  | | ||||| |  || ||||| ||  | ||||| ||||||||||| |||||||||||||| |||||||||||||| |||||| | ||||||||||| |||| |||     ||   ||     |      |    ||||| ||  ||   |  |  |   |||| || ||     ||    |  | | |||     ||||
AAGTTATGCAAAAAGCAAGAAGATAGCAATGTTTCTGGATTATGATGGGACTCTTTCTCCAATTGTTGATGATCCTGACCGTGCCCTGATGTCTGATGCTgtaagaaattgttactcattagtagtatgtgcaaagagttct-ttccttccctttccaaccctatgttgatattgcaatcaaataatttgttg-----tcag