1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
TTCTGATGAACAAAGATTCCTTGAAGCTTCAATGGCTTATGTCTCTGGAAATCCAATCTTGAGTGATGAAGAGTATGATAAGCTCAAAATGAAACTAAAGgttcttaatctatttatacttacaaatactatttcttagtttcatccatcttgttacatgtgtaatttggacaaacgttatgattgtttctttggtttctgtag
species | Arabidopsis thaliana |
transcript | AT4G11960.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: AATGAAACTAAAG ATGGACGGCAGTGAGATTGTGTGTEST: gi|116378737|gb|EG421329.1|EG421329
genomic: AATGAAACTAAAGgttcttaatc ... gtttctgtagATGGACGGCAGTGAGATTGTGTGT
EST: ATCCAATCTTGAGTGATGAAGAGTATGATAAGCTCAAAATGAAACTAAAG ATGGACGGCAGTGAGATTGTGTGTGAGGGTCCAAGATGCAGTCTTCGTAGTEST: gi|19877739|gb|AU238570.1|AU238570
genomic: ATCCAATCTTGAGTGATGAAGAGTATGATAAGCTCAAAATGAAACTAAAGgttcttaatc ... gtttctgtagATGGACGGCAGTGAGATTGTGTGTGAGGGTCCAAGATGCAGTCTTCGTAGT
EST: ATCCAATCTTGAGTGATGAAGAGTATGATAAGCTCAAAATGAAACTAAAG ATGGACGGCAGTGAGATTGTGTGTGAGGGTCCAAGATGCAGTCTTCGTAGTEST: gi|47831512|gb|CK121196.1|CK121196
genomic: ATCCAATCTTGAGTGATGAAGAGTATGATAAGCTCAAAATGAAACTAAAGgttcttaatc ... gtttctgtagATGGACGGCAGTGAGATTGTGTGTGAGGGTCCAAGATGCAGTCTTCGTAGT
EST: ATCCAATCTTGAGTGATGAAGAGTATGATAAGCTCAAAATGAAACTAAAG ATGGACGGCAGTGAGATTGTGTGTGAGGGTCCAAGATGCAGTCTTCGTAGTEST: gi|116378739|gb|EG421331.1|EG421331
genomic: ATCCAATCTTGAGTGATGAAGAGTATGATAAGCTCAAAATGAAACTAAAGgttcttaatc ... gtttctgtagATGGACGGCAGTGAGATTGTGTGTGAGGGTCCAAGATGCAGTCTTCGTAGT
EST: ATCCAATCTTGAGTGATGAAGAGTATGATAAGCTCAAAATGAAACTAAAG ATGGACGGCAGTGAGATTGTGTGTGAGGGTCCAAGATGCAGTCTTCGTAGT
genomic: ATCCAATCTTGAGTGATGAAGAGTATGATAAGCTCAAAATGAAACTAAAGgttcttaatc ... gtttctgtagATGGACGGCAGTGAGATTGTGTGTGAGGGTCCAAGATGCAGTCTTCGTAGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTCTGATGAACAAAGATTCCTTGAAGCTTCAATGGCTTATGTCTCTGGAAATCCAATCTTGAGTGATGAAGAGTATGATAAGCTCAAAATGAAACTAAAGgttcttaatctatttatacttacaaatactatttcttagtttcatccatcttgttacatgtgtaatttggacaaacgttatgattgtttctttggtttctgtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA