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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TATGAATGAGCTGAAAGACCAAGTGTGTTCATCGTGGTTTGCTCCAGTTGGATCTGCAAGTGATTATCCACTGTTATCCAAATGGTTCATCTACGGGGAGgtatctcttctgtaaactttctttgtgaatatgttttatttgttcaccctttaaattttttcctattcctaccctgttatttgcag

Basic information

species Arabidopsis thaliana
transcript AT4G11800.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G11800.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: LOC_Os07g01540.1 (Oryza sativa), 5'ss of exon 4
TATGAATGAGCTGAAAGACCAAGTGTGTTCATCGTGGTTTGCTCCAGTTGGATCTGCAAGTGATTATCCACTGTTATCCAAATGGTTCATCTACGGGGAGgtatctct----tctgtaaactttctttgtgaatatgttttatttgttcaccctttaaattttttcctattcctaccctgttatt-tgcag
|||||||||| | ||||| ||  | |||||||| ||||||||||| ||||||||||| ||||||||||| ||  ||||||||||| | ||||| ||||||||| | ||    ||  |  |  |  | | |   |   | ||    | | ||  | |  || ||   ||  |   | | ||||||| | |||
TATGAATGAGTTAAAAGATCAGATATGTTCATCTTGGTTTGCTCCGGTTGGATCTGCTAGTGATTATCCTCTTCTATCCAAATGGGTTATCTATGGGGAGgtaccgctggcctcgattcatctattctttcttttcatgtttccagctgacaatatccatgttacacttctttgatcatgttattctccag

upper sequence: AT4G11800.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GRMZM2G135839_T01 (Zea mays), 5'ss of exon 4
TATGAATGAGCTGAAAGACCAAGTGTGTTCATCGTGGTTTGCTCCAGTTGGATCTGCAAGTGATTATCCACTGTTATCCAAATGGTTCATCTACGGGGAGgtatctcttctgtaaactttctttgtgaatatgttttatttgttcaccctttaaattttttcctattcctaccctgttatttgcag----------
||||||| || |||||||  |  | ||||| || ||||||||||| ||||||||||||||||| |||||  |  |  | |||||| | |||||||||||||||   | |   |   |||| ||  |  ||   || || | |  |   ||| |  |    |||   |   ||    ||  |               
TATGAATCAGTTGAAAGATGAGATATGTTCGTCTTGGTTTGCTCCTGTTGGATCTGCAAGTGACTATCCTATTCTGGCAAAATGGGTTATCTACGGGGAGgtactgcctgcttctcctttattcatctattatttctagtcgcactttcttaaggtgacatccatgttgcacttctttgatcatgtttttctccag

upper sequence: AT4G11800.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA17G36310.1 (Glycine max), 5'ss of exon 3
TATGAATGAGCTGAAAGACCAAGTGTGTTCATCGTGGTTTGCTCCAGTTGGATCTGCAAGTGATTATCCACTGTTATCCAAATGGTTCATCTACGGGGAGgtatctcttctgtaaactttctttgtgaatatgttttatttgttcacccttta-aattttttcctattcctaccctg-ttatttgcag--------------------------------
 ||||| ||  |||||||||| || || ||||| |||||||| |||||||||||||||||||||||||| || || || || ||| | || || || ||||||  |  | |    |  |  ||     || || |||||    ||| |  |   ||||  |  ||||  | |   || || ||| ||                                 
GATGAACGAATTGAAAGACCAGGTTTGCTCATCTTGGTTTGCACCAGTTGGATCTGCAAGTGATTATCCTCTCTTGTCGAAGTGGGTTATTTATGGCGAGgtacttaatataatgatataatt-----atttgatttatgcagtcagctgtcgtaattcatatctatgtccattttggttctttacatggtttgatgccaaaattatttttatgtattag

upper sequence: AT4G11800.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA14G08860.1 (Glycine max), 5'ss of exon 3
TATGAATGAGCTGAAAGACCAAGTGTGTTCATCGTGGTTTGCTCCAGTTGGATCTGCAAGTGATTATCCACTGTTATCCAAATGGTTCATCTACGGGGAGgtatctcttctg----taaactttctttgtgaatatgttttatttgttcaccctttaaattttttcctattcctaccctgtt----atttgcag---------------------
 ||||| ||  |||| ||||| || || ||||| |||||||| |||||||||||||||||||||||||| || || || || ||| | || || |||||||||  |  | |     || | ||  ||  |  |||   | || |  |  |     || || | |  | ||||     || ||     ||||  |                     
GATGAACGAATTGAAGGACCAGGTCTGCTCATCTTGGTTTGCACCAGTTGGATCTGCAAGTGATTATCCTCTCTTGTCAAAGTGGGTTATTTATGGGGAGgtacttaatataatgatataattatttgatttatacagtctactgttgtaattcatatatctatgtccattctggttcttttcatggtttgatgccaaaattatttttgtattag

upper sequence: AT4G11800.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: Vv18s0001g11060.t01 (Vitis vinifera), 5'ss of exon 4
TATGAATGAGCTGAAAGACCAAGTGTGTTCATCGTGGTTTGCTCCAGTTGGATCTGCAAGTGATTATCCACTGTTATCCAAATGGTTCATCTACGGGGAGgtatctcttctgtaaactttctttgtgaatatgttttatt-tgttcaccctttaaattttttcctattcctaccctgttatttgcag
 ||||||||| ||||||| || || || ||||| ||||||||||||||||| ||||| |||||||| || || || ||||| ||| | || || ||||||||| |  |       | | |   | | | ||||| |  |  |  |||   |||   |   ||    ||  |    |    ||  |||
CATGAATGAGTTGAAAGATCAGGTCTGCTCATCTTGGTTTGCTCCAGTTGGTTCTGCCAGTGATTACCCGCTTTTGTCCAAGTGGGTTATTTATGGGGAGgtaccattagaagccattctgagttttattatgtctgttagttctcattttttttgtcacttatcgttattttttttgctttctcag