Sequence
atgc intronic sequence ATGC exonic sequenceTGATGTATGGTCTGTTGGTTGCATATTTGCTGAGATTATGACAAGGGAACCGCTTTTCCCGGGGAAGGATTACGTTCATCAGCTTAAACTTATCACTGAGgtatgatgttctgttttagaaagatctgtacaaatgttggaaacttttatttgtgtgttgcaatgtgtttatgagttgtttcatgtggttgagtag
Basic information
species | Arabidopsis thaliana |
transcript | AT4G11330.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT4G11330.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA11G02420.1 (Glycine max), 5'ss of exon 4
TGATGTATGGTCTGTTGGTTGCATATTTGCTGAGATTATGACAAGGGAACCGCTTTTCCCGGGGAAGGATTACGTTCATCAGCTTAAACTTATCACTGAGgtatga-tgttctgttttagaaagatctgtacaaatgttggaa-acttttatttgtgtgttgca--atgtgtttatga-gttgtttcatgtggttgagtag-
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TGATGTTTGGTCTGTTGGTTGCATATTTGGTGAAATTATGACCAGAGAACCCTTGTTTCCTGGGAAAGATTATGTTCATCAACTAAGGCTTATAACAGAGgtatgggtttgctgcttccatttgaaac-tacgggctctgaagcattctgagtaatacattggattacctatctctcacattagtttat-tggttgttcgct
upper sequence: AT4G11330.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA01G43100.1 (Glycine max), 5'ss of exon 4
TGATGTATGGTCTGTTGGTTGCATATTTGCTGAGATTATGACAAGGGAACCGCTTTTCCCGGGGAAGGATTACGTTCATCAGCTTAAACTTATCACTGAGgtatga-tgttctgttttagaaagatctgtacaaatgttggaaac--ttttatttgtgtgttg--caatgtgtttat-gagttgtttcatgtggttgagtag
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TGATGTTTGGTCTGTTGGTTGCATATTTGGTGAAATTATGACCAGAGAACCCTTGTTTCCTGGAAAAGATTATGTTCATCAACTGAGGCTTATAACAGAGgtatgggtttggtacttccatttgaaat-tatgggctgcggaagcattctaagtaatgcattggatgacctatctctcgcattagtttat-tggttgttctg
upper sequence: AT4G11330.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: Vv02s0025g00270.t01 (Vitis vinifera), 5'ss of exon 4
TGATGTATGGTCTGTTGGTTGCATATTTGCTGAGATTATGACAAGGGAACCGCTTTTCCCGGGGAAGGATTACGTTCATCAGCTTAAACTTATCACTGAGgtatgatgttctgt---tttagaaagatctgtacaaatgttggaaac--ttttatttgtgtgttgcaatg-----tgtttatgagttgtttcatgtggttgagtag-----------------------------
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TGATATATGGTCTGTTGGTTGCATACTAGGTGAAATCATGACCAGAGAACCATTATTCCCTGGCAAAGATTATGTTCATCAGCTGAGGCTTATCACAGAGgtatggttcttggtgcttttggagtgatgtttacttttggctgcagcattcttgtttccagttttccatgataaatcctacaaaatcagccaatctggctcagaactaccacaatttttttctttggtgtgacagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|125296203|gb|EL310288.1|EL310288EST: CGCTTTTCCCGGGGAAGGATTACGTTCATCAGCTTAAACTTATCACTGAG TTGATAGGATCACCTGATGGAGCGAGTCTAGAGTTTCTCAGAAGCGCGAAC
genomic: CGCTTTTCCCGGGGAAGGATTACGTTCATCAGCTTAAACTTATCACTGAGgtatgatgtt ... ggttgagtagTTGATAGGATCACCTGATGGAGCGAGTCTAGAGTTTCTCAGAAGCGCGAAC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TGATGTATGGTCTGTTGGTTGCATATTTGCTGAGATTATGACAAGGGAACCGCTTTTCCCGGGGAAGGATTACGTTCATCAGCTTAAACTTATCACTGAGgtatgatgttctgttttagaaagatctgtacaaatgttggaaacttttatttgtgtgttgcaatgtgtttatgagttgtttcatgtggttgagtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT