Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTATTTGAATTTGCGGACAAATACAGAGGCAAATATGACAGCAGCATTACCGTGGCACAAAAATATTACCGATCCGTCAGCGGTTACAATgtacttaacgcaaactctcttaagtaactaacgaaaacatttgttgctagctattgatattttactagcgcaattttgtataaccag

Basic information

species Arabidopsis thaliana
transcript AT4G11050.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G11050.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA05G36930.1 (Glycine max), 5'ss of exon 4
CTATTTGAATTTGCGGACAAATACAGAGGCAAATATGACAGCAGCATTACCGTGGCACAAAAATATTACCGATCCGTCAGCGGTTACAATgta----cttaacgca-aactctcttaagtaactaacgaaaacattt----gttgc-tagctattga--tattttactagcgcaattttgtataaccag--------
|||||||| ||||| ||||||||||||||||||||||||||||||||||| || || || ||||||||| ||||| |||| ||||||||||||     ||     | || | | || | | | | ||      || |    ||||   |  ||   |  | |   | ||    | | |||  |||            
CTATTTGATTTTGCTGACAAATACAGAGGCAAATATGACAGCAGCATTACGGTTGCCCAGAAATATTACAGATCCATCAGTGGTTACAATgtaattttttgttttataattgtgtttattgattcacccctttatgttaaagttgaacaaatacaaaactttcccattaattgagtgttg-gtaattgaacgttcag

upper sequence: AT4G11050.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA08G02610.1 (Glycine max), 5'ss of exon 4
CTATTTGAATTTGCGGACAAATACAGAGGCAAATATGACAGCAGCATTACCGTGGCACAAAAATATTACCGATCCGTCAGCGGTTACAATgtacttaacgcaaactctcttaagtaactaacgaaaacatttgttgctagcta-ttgatattttactagcgcaattttgtataaccag-------------------------------------------------------------------------------------------------------
|||||||| ||||| |||||||||||||||||||||||||||||||| || || || ||||| |||||| ||||| |||| ||||||||||||  |         |   ||| ||   |  |       | ||||   |   |    |||    |||  | || ||| | | ||  |                                                                                                        
CTATTTGATTTTGCTGACAAATACAGAGGCAAATATGACAGCAGCATCACGGTTGCCCAAAAGTATTACAGATCCATCAGTGGTTACAATgtaagtttttgttgtttaattatgtttatttcacccctttctgttaaaattgagcaaatacaaaactttccca-tttggaaaaatgaattaatgtgcatacggcatgcctaaattaaaattaaaaaaatcaattgcaaatgaaaggaaacaaaagtaacaattaattgagggttggtaattgaacgtgcag

upper sequence: AT4G11050.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: Vv02s0025g01380.t01 (Vitis vinifera), 5'ss of exon 6
CTATTTGAATTTGCGGACAAATACAGAGGCAAATATGACAGCAGCATTACCGTGGCACAAAAATATTACCGATCCGTCAGCGGTTACAATgtacttaacgcaaactctcttaagtaactaac-------gaaaacatttgttgctagctattg-atattttactagcgcaatt--ttgtataaccag--------------------
|| || || ||||  ||||||||||| |||||||||||||||||||| || ||||| || || || ||||| ||   ||| || |||  ||||| | |    | |||| || |   | | |        |  |   |     | | | | | |   |      || |  ||||   ||||| ||  |                    
CTGTTCGAGTTTGGAGACAAATACAGGGGCAAATATGACAGCAGCATCACAGTGGCCCAGAAGTACTACCGGTCTTACAGTGGATACGCTgtacgtgatcatagctcttttgaactagtgattccatgtgggacagtgcacggtttggtctggtgcaccactttaactgaattaactgtatgacatgttggtaattgatgtttgtag