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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTGATGACGAAATGCGAACTCTTAATGTTCCCTCGTTACAGACTGACGGTTTGATTTTCCTCTGGGTCACTGGTCGTGCTATGGAACTAGGCCGTGAATGgtacttagaaaaatctcaacaaattttgtgttcatgtgcttttccactctaatggagttttttttttttttttaag

Basic information

species Arabidopsis thaliana
transcript AT4G10760.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G10760.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: LOC_Os02g45110.1 (Oryza sativa), 5'ss of exon 4
CTGATGACGAAATGCGAACTCTTAATGTTCCCTCGTTACAGACTGACGGTTTGATTTTCCTCTGGGTCACTGGTCGTGCTATGGAACTAGGCCGTGAATGgtac-ttagaaaaatctcaacaaatt--ttgtgttcatgtgcttttccactctaatggagttttttttttttttttaag---------------------
||||||| |||||| | || |||||||| ||  | ||||| ||||| || || |||||| | ||||||||||||||||| |||||||| || || || |||||  ||   | ||    |    |||  |||| ||||   |      ||   ||||  |   ||   |    |||||                       
CTGATGATGAAATGAGGACCCTTAATGTCCCTGCTTTACAAACTGATGGATTAATTTTCTTATGGGTCACTGGTCGTGCAATGGAACTTGGTCGGGAGTGgtaagtttccagaactatatttgattagttgtcttcagcagtaccaacaggttaattaataattgcgtagcattttagcattgttcatatcctaatgccc

upper sequence: AT4G10760.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GRMZM2G116563_T01 (Zea mays), 5'ss of exon 4
CTGATGACGAAATGCGAACTCTTAATGTTCCCTCGTTACAGACTGACGGTTTGATTTTCCTCTGGGTCACTGGTCGTGCTATGGAACTAGGCCGTGAATGgtacttagaaaaatctcaacaaattttgtgttcatgtgcttttccact--ctaatggagttttttttttttttttaag-------------------------
||||||| |||||| | || |||||||||||  |  | || ||||| |||||||||||  | ||||||||||||||||| ||||| || || || ||||||||   ||     | |    |||  ||   ||  | ||  ||| |  |  | | |     | | |||| |     |||                         
CTGATGATGAAATGAGGACGCTTAATGTTCCAACTCTGCAAACTGATGGTTTGATTTTTTTATGGGTCACTGGTCGTGCCATGGAGCTTGGGCGAGAATGgta---agttttctgttttaaaaccttaattttttttgtctttactgtaacaactaacaatatgttttctccaacaagatctcaatggccgttgaagggtttt

upper sequence: AT4G10760.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA07G07300.1 (Glycine max), 5'ss of exon 5
CTGATGACGAAATGCGAACTCTTAATGTTCCCTCGTTACAGACTGACGGTTTGATTTTCCTCTGGGTCACTGGTCGTGCTATGGAACTAGGCCGTGAATGgtact-tagaaaaatctcaacaaattttgtgttcatgtgcttttccactctaatggagttttttttttttttttaag-------------------------------------------------------------
||||||| |||||||| | ||||||||| ||  | || || ||||| ||| | ||||| || ||||||||||| ||||| |||||||| || || |||||||| | |      || | |  | ||  |   ||  |||  |  |  |    ||   |  | | |  | |  ||                                                                 
CTGATGATGAAATGCGCAGTCTTAATGTCCCTGCTTTGCAAACTGATGGTCTTATTTTTCTATGGGTCACTGGACGTGCAATGGAACTTGGGCGGGAATGgtattgtgtttgtatttgattatatgcta-attgttgttttgataaaaaaaaaaaaaaatctatcatctggttagcagagaagtctgccttttgttaatgtcatgtatttgatttctatatccatatgctccctccag

upper sequence: AT4G10760.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA16G03690.1 (Glycine max), 5'ss of exon 5
CTGATGACGAAATGCGAACTCTTAATGTTCCCTCGTTACAGACTGACGGTTTGATTTTCCTCTGGGTCACTGGTCGTGCTATGGAACTAGGCCGTGAATGgtacttagaaaaatctcaacaaattttgtgttcatgtgcttttccactctaatggagttttttttttttttttaag--------------------------------------------------------------
| ||||| |||||||| | ||||||||| ||  | || || ||||| ||| | ||||| || ||||||||||| ||||| |||||||| || || |||||||| |      | |   |     || | || | || ||  |||    |  ||   |   | | || | |  |||                                                                
CCGATGATGAAATGCGCAGTCTTAATGTCCCTGCTTTGCAAACTGATGGTCTTATTTTTCTATGGGTCACTGGACGTGCGATGGAACTTGGACGGGAATGgtatt----gtatttgtatttggttatatgctaat-tgtatttttgataaaaaaaataatctattatctgattagcatataagtcttgcttttgttaatattctgtatttggtttctatacccatatgttccatccag

upper sequence: AT4G10760.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: Vv02s0025g02400.t01 (Vitis vinifera), 5'ss of exon 4
CTGATGACGAAATGCGAACTCTTAATGTTCCCTCGTTACAGACTGACGGTTTGATTTTCCTCTGGGTCACTGGTCGTGCTATGGAACTAGGCCGTGAATGgtacttagaaaaatctcaacaaattttgtgttcatgtgcttttccactctaatggagttttttttttttttttaag--------------------------
||||||| |||||||| | ||||||||||||  | || |||||||| ||| ||||||| || ||||||||||| || |||||||| || || || ||||||||  | |    ||||  |   || |||   ||||       ||   |||    | ||||    ||| ||   ||                           
CTGATGATGAAATGCGCAGTCTTAATGTTCCTGCATTGCAGACTGATGGTCTGATTTTTCTTTGGGTCACTGGACGCGCTATGGAGCTTGGACGAGAATGgtatatggct--atctttatttatattgcaatcataaaacaatcttttctggatgggtttaacatttcttacaaaaaagtttagaatgttctgcaagttcaa

upper sequence: AT4G10760.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: PP1S249_97V6.1 (Physcomitrella patens), 5'ss of exon 5
CTGATGACGAAATGCGAACTCTTAATGTTCCCTCGTTACAGACTGACGGTTTGATTTTCCTCTGGGTCACTGGTCGTGCTATGGAACTAGGCCGTGAATGgtacttagaaaaatctcaacaaattttgtgttca-----tgtgc---ttttccactctaatggagttttttttttttttttaag----------------
||||||| || ||||| | ||| ||||| ||  |  | || || || ||  | || || || |||||||||||||||||||||||||| ||  | |||||||| ||    | || |   |||| |     | |      |  ||   | ||||   |  ||| | |  ||   | || ||| ||                
CTGATGATGAGATGCGTAATCTGAATGTACCAGCACTGCAAACAGATGGACTTATATTTCTTTGGGTCACTGGTCGTGCTATGGAACTCGGAAGAGAATGgtaattttctatattttcccaaactactcttccgatggttaggccagtattcccgacgtatgtattgattaaatcttatttcagaattataaatgtgcac