Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCATGCGAGATGGGCTATGTTAGGAGCAGCTGGTTTCATCATTCCTGAAGCTTTAAACAAATATGGCGCTAACTGTGGCCCTGAAGCTGTCTGGTTTAAGgttcttgcctacgtctaatctttatttacattcagacttagattctttagcaaagcaagaatgtgttgatgtgatgagatggttctttttggaatactgattgcag

Basic information

species Arabidopsis thaliana
transcript AT4G10340.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G10340.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA20G35530.1 (Glycine max), 5'ss of exon 4
CCATGCGAGATGGGCTATGTTAGGAGCAGCTGGTTTCATCATTCCTGAAGCTTTAAACAAATATGGCGCTAACTGTGGCCCTGAAGCTGTCTGGTTTAAGgttcttgcctacgtctaatctttatttacattcagacttagattctttagcaaagcaagaatgtgttgatgtgatgagatggttctttttggaatactgattgcag----
 ||||| |||||||| ||| | || || ||||| |||||||||||||| || || |||||||| || ||||||||||| ||||| ||||| ||||| ||||||       |  |||    |  |||  ||  |    ||| |||| |||  |   ||   || |  |||    |  |  |   | |||    |   |||||  ||     
TCATGCCAGATGGGCAATGCTTGGTGCTGCTGGATTCATCATTCCTGAGGCCTTTAACAAATACGGAGCTAACTGTGGTCCTGAGGCTGTTTGGTTCAAGgtttgca---agatctg---tcaattgtcacccctg-ttaaattcattaata---cactgattttatgactcaacaaattaagtatttagaaatacctgataacacaatt

upper sequence: AT4G10340.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA09G28200.1 (Glycine max), 5'ss of exon 5
CCATGCGAGATGGGCTATGTTAGGAGCAGCTGGTTTCATCATTCCTGAAGCTTTAAACAAATATGGCGCTAACTGTGGCCCTGAAGCTGTCTGGTTTAAGgttcttgcctacgtctaatctttatttacattcagacttagattctttagcaaagcaagaatgtgttgatgtgatgagatggttctttttggaatactgattgcag
 ||||| |||||||| ||| | || || ||||| |||||||||||||| || || ||||||||||| || |||||||| || |||||||| ||||| ||||||  |||  | |  | ||   |  | ||||  |||  |       |        ||  |||   ||  | |  | |      ||        | | | | |    
TCATGCCAGATGGGCAATGCTTGGTGCTGCTGGATTCATCATTCCTGAGGCCTTCAACAAATATGGAGCAAACTGTGGTCCAGAAGCTGTTTGGTTCAAGgtt--tgc--aagctttataaattataacatcaagaaatgtgactgtgtcttgttcactaatacattattttttttatggcactcaacgaatgaaattcaatat--

upper sequence: AT4G10340.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA10G32080.1 (Glycine max), 5'ss of exon 4
CCATGCGAGATGGGCTATGTTAGGAGCAGCTGGTTTCATCATTCCTGAAGCTTTAAACAAATATGGCGCTAACTGTGGCCCTGAAGCTGTCTGGTTTAAGgttcttgcctacgtctaatctttatttacattcagacttagattctttagcaaagcaagaatgtgttgatgtgatgagatggttct-ttttggaatactgattgcag
 ||||| |||||||| ||| | || || ||||| |||||||||||||| || || |||||||| || ||||||||||| ||||| ||||| ||||| ||||||        |    |||  | |      ||   ||||   |  |  |   |    |  |       |  | |  |  | | |||   |   || || | |     
TCATGCCAGATGGGCAATGCTTGGTGCTGCTGGATTCATCATTCCTGAGGCCTTTAACAAATACGGAGCTAACTGTGGTCCTGAGGCTGTTTGGTTCAAGgtttgcaagatctgtcaattgtaacccctgtt--aacttcattaatgcactgattttatgactcaacaaattaagtatttagatctgcctcataacacaggt-----

upper sequence: AT4G10340.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA16G33030.1 (Glycine max), 5'ss of exon 4
CCATGCGAGATGGGCTATGTTAGGAGCAGCTGGTTTCATCATTCCTGAAGCTTTAAACAAATATGGCGCTAACTGTGGCCCTGAAGCTGTCTGGTTTAAGgttcttgcctacgtctaatctttatttacattcagacttagattctttagcaaagcaagaatgtgttgatgtgatgagatggttctttttggaa-tactgattgcag
 || || |||||||| ||| | || || ||||| ||||||||||| || || || ||||||||||| || ||||| || ||||| ||||| ||||| ||||||  |||  | |  | ||    | || || |  |  | |  |||  ||  | |  |    | | |     | |  | |||    |   | ||  |    | |||  
TCACGCCAGATGGGCAATGCTTGGTGCTGCTGGATTCATCATTCCCGAGGCCTTCAACAAATATGGAGCAAACTGCGGTCCTGAGGCTGTTTGGTTCAAGgtt--tgc--aagctttataacaactttcactgtg--tcaagttcactaatacattatttttttatgacactcaacaaatgaaattcaatagatcttacaagtgct-

upper sequence: AT4G10340.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: Vv18s0089g01170.t01 (Vitis vinifera), 5'ss of exon 5
CCATGCGAGATGGGCTATGTTAGGAGCAGCTGGTTTCATCATTCCTGAAGCTTTAAACAAATATGGCGCTAACTGTGGCCCTGAAGCTGTCTGGTTTAAGgttcttgcctacgtctaatctttatttacattcagacttagattctttagcaaagcaa-gaatgtgttgatgtgatgagatggttctttttggaatactgattgcag
||| ||  | ||||||||| | || |||||||| |||||||| ||||| || || |||||||  || || ||||| |||||||||||||| ||||| ||||||     |     ||   ||||    |  | |  |   |  || |  | |    |   | || |||            | ||   ||   ||||  | |       
CCACGCCCGGTGGGCTATGCTCGGCGCAGCTGGCTTCATCATCCCTGAGGCCTTCAACAAATTCGGTGCCAACTGCGGCCCTGAAGCTGTGTGGTTCAAGgtttgcttccttaacttcccttttccaaattcctcaaaaaatttatccaccctttccttggatttgtactcccacaagaaggggaattcgaggaaggcag-------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124811023|gb|EH895889.1|EH895889
EST:     AAATATGGCGCTAACTGTGGCCCTGAAGCTGTCTGGTTTAAG                         ACTGGTGCTTTGCTTCTTGATGGAAACACATTGAACTACTTTGGCAAGAAC
genomic: AAATATGGCGCTAACTGTGGCCCTGAAGCTGTCTGGTTTAAGgttcttgcct ... ctgattgcagACTGGTGCTTTGCTTCTTGATGGAAACACATTGAACTACTTTGGCAAGAAC
EST: gi|124996576|gb|EL068845.1|EL068845
EST:     CTGTCTGGTTTAAG                         ACTGGTGCTTTGCTTCTTGATGGAAACACATTGAACTACTTTGGCAAGAAC
genomic: CTGTCTGGTTTAAGgttcttgcct ... ctgattgcagACTGGTGCTTTGCTTCTTGATGGAAACACATTGAACTACTTTGGCAAGAAC
EST: gi|86081972|gb|DR377731.1|DR377731
EST:     CTTTAAACAAATATGGCGCTAACTGTGGCCCTGAAGCTGTCTGGTTTAAG                         ACTGGTGCTTTGCTTCTTGATGGAAACACATTGAACTACTTTGGCAAGAAC
genomic: CTTTAAACAAATATGGCGCTAACTGTGGCCCTGAAGCTGTCTGGTTTAAGgttcttgcct ... ctgattgcagACTGGTGCTTTGCTTCTTGATGGAAACACATTGAACTACTTTGGCAAGAAC
EST: gi|125287654|gb|EL301739.1|EL301739
EST:     AAACAAATATGGCGCTAACTGTGGCCCTGTTAAGCTGTCTGGTTTAAG                         ACTGGTGCTTTGCTTCTTGATGGAAACACATTGAACTACTTTGGCAAGAAC
genomic: AAACAAATATGGCGCTAACTGTGGCCCTG--AAGCTGTCTGGTTTAAGgttcttgcct ... ctgattgcagACTGGTGCTTTGCTTCTTGATGGAAACACATTGAACTACTTTGGCAAGAAC
EST: gi|124957809|gb|EL032604.1|EL032604
EST:     CTTTAAACAAATATGGCGCTAACTGTGGCCCTGAAGCTGTCTGGTTTAAG                         ACTGGTGCTTTGCTTCTTGATGG
genomic: CTTTAAACAAATATGGCGCTAACTGTGGCCCTGAAGCTGTCTGGTTTAAGgttcttgcct ... ctgattgcagACTGGTGCTTTGCTTCTTGATGG
EST: gi|125315856|gb|EL329941.1|EL329941
EST:     ATGGCGCTAACTGTGGCCCTGAAGCTGTCTGGTTTAAG                         ACTGGTGCTTTGCTTCTTGATGGAAACACATTAGAACTACTTTGGCAAGAA
genomic: ATGGCGCTAACTGTGGCCCTGAAGCTGTCTGGTTTAAGgttcttgcct ... ctgattgcagACTGGTGCTTTGCTTCTTGATGGAAACACATT-GAACTACTTTGGCAAGAA
EST: gi|124999919|gb|EL072188.1|EL072188
EST:     CTTTAAACAAATATGGCGCTAACTGTGGCCCTGAAGCTGTCTGGTTTAAG                         ACTGGTGCTTTGCTTCTTGATGGAAACACATTGAACTACTTTG
genomic: CTTTAAACAAATATGGCGCTAACTGTGGCCCTGAAGCTGTCTGGTTTAAGgttcttgcct ... ctgattgcagACTGGTGCTTTGCTTCTTGATGGAAACACATTGAACTACTTTG
EST: gi|125288245|gb|EL302330.1|EL302330
EST:     CTTTAAACAAATATGGCGCTAACTGTGGCCCTGAAGCTGTCTGGTTTAAG                         ACTGGTGCTTTGCTTCTTGATGGAA
genomic: CTTTAAACAAATATGGCGCTAACTGTGGCCCTGAAGCTGTCTGGTTTAAGgttcttgcct ... ctgattgcagACTGGTGCTTTGCTTCTTGATGGAA
EST: gi|125089638|gb|EL147930.1|EL147930
EST:     CTTTAAACAAATATGGCGCTAACTGTGGCCCTGAAGCTGTCTGGTTTAAG                         ACTGGTGCTTTGCT
genomic: CTTTAAACAAATATGGCGCTAACTGTGGCCCTGAAGCTGTCTGGTTTAAGgttcttgcct ... ctgattgcagACTGGTGCTTTGCT
EST: gi|125259643|gb|EL273728.1|EL273728
EST:     CTTTAAACAAATATGGCGCTAACTGTGGCCCTGAAGCTGTCTGGTTTAAG                         ACTGGTGCTTTGCTTCTTGATGGA
genomic: CTTTAAACAAATATGGCGCTAACTGTGGCCCTGAAGCTGTCTGGTTTAAGgttcttgcct ... ctgattgcagACTGGTGCTTTGCTTCTTGATGGA
EST: gi|125008497|gb|EL080766.1|EL080766
EST:     AACTGTGGCCCTGAAGCTGTCTGGTTTAAG                         ACTGGTGCTTTGCTTCTTGATGGAAACACATTGAACTACTTTGGCAAGAAC
genomic: AACTGTGGCCCTGAAGCTGTCTGGTTTAAGgttcttgcct ... ctgattgcagACTGGTGCTTTGCTTCTTGATGGAAACACATTGAACTACTTTGGCAAGAAC
EST: gi|124727748|gb|EH819150.1|EH819150
EST:     CTTTAAACAAATATGGCGCTAACTGTGGCCCTGAAGCTGTCTGGTTTAAG                         ACTGGTGCTTTGCTTCTTGATGGAAACACATTGAACTACTTTGGCAAGAAC
genomic: CTTTAAACAAATATGGCGCTAACTGTGGCCCTGAAGCTGTCTGGTTTAAGgttcttgcct ... ctgattgcagACTGGTGCTTTGCTTCTTGATGGAAACACATTGAACTACTTTGGCAAGAAC
EST: gi|125166825|gb|EL192437.1|EL192437
EST:     CTTTAAACAAATATGGCGCTAACTGTGGCCCTGAAGCTGTCTGGTTTAAG                         -CTGGTGCTTTGCTTCTTGATGGAAACAC
genomic: CTTTAAACAAATATGGCGCTAACTGTGGCCCTGAAGCTGTCTGGTTTAAGgttcttgcct ... ctgattgcagACTGGTGCTTTGCTTCTTGATGGAAACAC
EST: gi|124852042|gb|EH936479.1|EH936479
EST:     CTGTCTGGTTTAAG                         ACTGGTGCTTTGCTTCTTGATGGAAACACATTGAACTACTTTGGCAAGAAC
genomic: CTGTCTGGTTTAAGgttcttgcct ... ctgattgcagACTGGTGCTTTGCTTCTTGATGGAAACACATTGAACTACTTTGGCAAGAAC
EST: gi|125071080|gb|EL136259.1|EL136259
EST:     TTAAACAAATATGGCGCTAACTTGTTGGCCCTGAAGCTGTCTGGTTTAAG                         ACTGGTGCTTTGCTTCTTGATGGAAACACATTGAACTACTTTGGCAAG
genomic: TTAAACAAATATGGCGCTAAC-TG-TGGCCCTGAAGCTGTCTGGTTTAAGgttcttgcct ... ctgattgcagACTGGTGCTTTGCTTCTTGATGGAAACACATTGAACTACTTTGGCAAG
EST: gi|125253966|gb|EL268051.1|EL268051
EST:     CTTTAAACAAATATGGCGCTAACTGTGGCCCTGAAGCTGTCTGGTTTAAG                         ACTGGTGCTTTGCTTCTTGAT
genomic: CTTTAAACAAATATGGCGCTAACTGTGGCCCTGAAGCTGTCTGGTTTAAGgttcttgcct ... ctgattgcagACTGGTGCTTTGCTTCTTGAT
EST: gi|125057435|gb|EL126634.1|EL126634
EST:     CTTTAAACAAATATGGCGCTAACTGTGGCCCTGAAGCTGTCTGGTTTAAG                         ACTGGTGCTTTGCTTCTTGATGGAAACACATTGAA
genomic: CTTTAAACAAATATGGCGCTAACTGTGGCCCTGAAGCTGTCTGGTTTAAGgttcttgcct ... ctgattgcagACTGGTGCTTTGCTTCTTGATGGAAACACATTGAA
EST: gi|125279786|gb|EL293871.1|EL293871
EST:     CTTTAAACAAATATGGCGCTAACTGTGGCCCTGAAGCTGTCTGGTTTAAG                         ACTGGTGCTTTG
genomic: CTTTAAACAAATATGGCGCTAACTGTGGCCCTGAAGCTGTCTGGTTTAAGgttcttgcct ... ctgattgcagACTGGTGCTTTG
EST: gi|124824122|gb|EH908988.1|EH908988
EST:     TCTGGTTTAAG                         ACTGGTGCTTTGCTTCTTGATGGAAACACATTGAACTACTTTGGCAAGAAC
genomic: TCTGGTTTAAGgttcttgcct ... ctgattgcagACTGGTGCTTTGCTTCTTGATGGAAACACATTGAACTACTTTGGCAAGAAC
EST: gi|124754999|gb|EH845129.1|EH845129
EST:     CTGTCTGGTTTAAG                         ACTGGTGCTTTGCTTCTTGATGGAAACACATTGAACTACTTTGGCAAGAAC
genomic: CTGTCTGGTTTAAGgttcttgcct ... ctgattgcagACTGGTGCTTTGCTTCTTGATGGAAACACATTGAACTACTTTGGCAAGAAC
EST: gi|125142873|gb|EL179895.1|EL179895
EST:     CTTTAAACAAATATGGCGCTAACTGTGGCCCTGAAGCTGTCTGGTTTAAG                         ACTGGTGCTTTGCTTCTTGATGGAAACACATTGAACTACTTTGGCAAG
genomic: CTTTAAACAAATATGGCGCTAACTGTGGCCCTGAAGCTGTCTGGTTTAAGgttcttgcct ... ctgattgcagACTGGTGCTTTGCTTCTTGATGGAAACACATTGAACTACTTTGGCAAG
EST: gi|125033981|gb|EL106250.1|EL106250
EST:     GGCGCTAACTGTGGCCCTGAAGCTGTCTGGTTTAAG                         ACTGGTGCTTTGCTTCTCGATGGAAACACATTGAACTACTTTGGCAAGAAC
genomic: GGCGCTAACTGTGGCCCTGAAGCTGTCTGGTTTAAGgttcttgcct ... ctgattgcagACTGGTGCTTTGCTTCTTGATGGAAACACATTGAACTACTTTGGCAAGAAC
EST: gi|125107617|gb|EL160850.1|EL160850
EST:     CTTTAAACAAATATGGCGCTAACTGTGGCCCTGAAGCTGTCTGGTTTAAG                         ACTGGTGCTTTGCTTCTTGATGGAAACACACTGAACTACTTTGGCAA
genomic: CTTTAAACAAATATGGCGCTAACTGTGGCCCTGAAGCTGTCTGGTTTAAGgttcttgcct ... ctgattgcagACTGGTGCTTTGCTTCTTGATGGAAACACATTGAACTACTTTGGCAA
EST: gi|124964246|gb|EL038526.1|EL038526
EST:     CTTTAAACAAATATGGCGCTAACTGTGGCCCTGAAGCTGTCTGGTTTAAG                         ACTGGTGCTTTGCTTC
genomic: CTTTAAACAAATATGGCGCTAACTGTGGCCCTGAAGCTGTCTGGTTTAAGgttcttgcct ... ctgattgcagACTGGTGCTTTGCTTC
EST: gi|125041370|gb|EL113639.1|EL113639
EST:     TCTGGTTTAAG                         ACTGGTGCTTTGCTTCTTGATGGAAACACATTGAACTACTTTGGCAAGAAC
genomic: TCTGGTTTAAGgttcttgcct ... ctgattgcagACTGGTGCTTTGCTTCTTGATGGAAACACATTGAACTACTTTGGCAAGAAC
EST: gi|124764302|gb|EH854432.1|EH854432
EST:     CTAACTGTGGCCCTGAAGCTGTCTGGTTTAAG                         ACTGGTGCTTTGCTTCTTGATGGAAACACATTGAACTACTTTGGCAAGAAC
genomic: CTAACTGTGGCCCTGAAGCTGTCTGGTTTAAGgttcttgcct ... ctgattgcagACTGGTGCTTTGCTTCTTGATGGAAACACATTGAACTACTTTGGCAAGAAC
EST: gi|47831762|gb|CK121446.1|CK121446
EST:     C-TTAAACAAATATGGCGCTAACTGTGGCCCTGAAGCTGTCTGGTTTAAG                         ACTGGTGCTTTGCTTCTTGATGGAAACACATTGAACTACTTTGGCAAGAAC
genomic: CTTTAAACAAATATGGCGCTAACTGTGGCCCTGAAGCTGTCTGGTTTAAGgttcttgcct ... ctgattgcagACTGGTGCTTTGCTTCTTGATGGAAACACATTGAACTACTTTGGCAAGAAC
EST: gi|125201370|gb|EL216324.1|EL216324
EST:     CTAACTGTGGCCCTGAAGCTGTCTGGTTTAAG                         ACTGGTGCTTTGCTTCTTGATGGAAACACATTGAACTACTTTGGCAAGAAC
genomic: CTAACTGTGGCCCTGAAGCTGTCTGGTTTAAGgttcttgcct ... ctgattgcagACTGGTGCTTTGCTTCTTGATGGAAACACATTGAACTACTTTGGCAAGAAC
EST: gi|125292759|gb|EL306844.1|EL306844
EST:     TCTGGTTTAAG                         ACTGGTGCTTTGCTTCTTGATGGAAACACATTGAACTACTTTGGCAAGAAC
genomic: TCTGGTTTAAGgttcttgcct ... ctgattgcagACTGGTGCTTTGCTTCTTGATGGAAACACATTGAACTACTTTGGCAAGAAC
EST: gi|125313402|gb|EL327487.1|EL327487
EST:     GTGGCCCTCGAAGCTGTCTGGTTTAAG                         ACTGGTGCTTTGCTTCTTGATGGAAACACATTGAACTACTTTGGCAAGAAC
genomic: GTGGCCCT-GAAGCTGTCTGGTTTAAGgttcttgcct ... ctgattgcagACTGGTGCTTTGCTTCTTGATGGAAACACATTGAACTACTTTGGCAAGAAC
EST: gi|116402169|gb|EG444761.1|EG444761
EST:     CTTTAAACAAATATGGCGCTAACTGTGGCCCTGAAGCTGTCTGGTTTAAG                         ACTGGTGCTTTGCTTCTTGATGGAAAC-CATTGAACTACTTTGGCAAGAAC
genomic: CTTTAAACAAATATGGCGCTAACTGTGGCCCTGAAGCTGTCTGGTTTAAGgttcttgcct ... ctgattgcagACTGGTGCTTTGCTTCTTGATGGAAACACATTGAACTACTTTGGCAAGAAC
EST: gi|125304534|gb|EL318619.1|EL318619
EST:     TGGCGCTAACTGTGGCCCTGAAGCTGTCTGGTTTAAG                         ACTGGTGCTTTGCTTCTTGATGGAAACACATTGAACTACTTTGGCAAGAAC
genomic: TGGCGCTAACTGTGGCCCTGAAGCTGTCTGGTTTAAGgttcttgcct ... ctgattgcagACTGGTGCTTTGCTTCTTGATGGAAACACATTGAACTACTTTGGCAAGAAC
EST: gi|125218595|gb|EL232678.1|EL232678
EST:     CTTTAAACAAATATGGCGCTAACTGTGGCCCTGAAGCTGTCTGGTTTAAG                         ACTGGTGCTTT
genomic: CTTTAAACAAATATGGCGCTAACTGTGGCCCTGAAGCTGTCTGGTTTAAGgttcttgcct ... ctgattgcagACTGGTGCTTT
EST: gi|124706583|gb|EH797985.1|EH797985
EST:     AATATGGCGCTAACTGTGGCCCTGAAGCTGTCTGGTTTAAG                         ACTGGTGCTTTGCTTCTTGATGGAAACACATTGAACTACTTTGGCAAGAAC
genomic: AATATGGCGCTAACTGTGGCCCTGAAGCTGTCTGGTTTAAGgttcttgcct ... ctgattgcagACTGGTGCTTTGCTTCTTGATGGAAACACATTGAACTACTTTGGCAAGAAC
EST: gi|125312186|gb|EL326271.1|EL326271
EST:     AAGCTGTCTGGTTTAAG                         ACTGGTGCTTTGCTTCTTGATGGAAACACATTGAACTACTTTGGCAAGAAC
genomic: AAGCTGTCTGGTTTAAGgttcttgcct ... ctgattgcagACTGGTGCTTTGCTTCTTGATGGAAACACATTGAACTACTTTGGCAAGAAC
EST: gi|124811238|gb|EH896104.1|EH896104
EST:     CTGTGGCCCTGAAGCTGTCTGGTTTAAG                         ACTGGTGCTTTGCTTCTTGATGGAAACACATTGAACTACTTTGGCAAGAAC
genomic: CTGTGGCCCTGAAGCTGTCTGGTTTAAGgttcttgcct ... ctgattgcagACTGGTGCTTTGCTTCTTGATGGAAACACATTGAACTACTTTGGCAAGAAC
EST: gi|116467517|gb|EG510109.1|EG510109
EST:     CTTTAAACAAATATGGCGCTAACTGTGGCCCTGAAGCTGTCTGGTTTAAG                         ACTGGTGCTTTGCTTCTTGATGGAAACACATTGAACTACTTTGGCAAGAAC
genomic: CTTTAAACAAATATGGCGCTAACTGTGGCCCTGAAGCTGTCTGGTTTAAGgttcttgcct ... ctgattgcagACTGGTGCTTTGCTTCTTGATGGAAACACATTGAACTACTTTGGCAAGAAC
EST: gi|125317575|gb|EL331660.1|EL331660
EST:     CGCTAACTGTGGCCCTGAAGCTGTCTGGTTTAAG                         ACTGGTGCTTTGCTTCTTGATGGAAACACATTGAACTACTTTGGCAAGAAC
genomic: CGCTAACTGTGGCCCTGAAGCTGTCTGGTTTAAGgttcttgcct ... ctgattgcagACTGGTGCTTTGCTTCTTGATGGAAACACATTGAACTACTTTGGCAAGAAC
EST: gi|124915047|gb|EH988921.1|EH988921
EST:     CAAATATGGCGCTAACTGTGGCCCTGAAGCTGTCTGGTTTAAG                         ACTGGTGCTTTGCTTCTTGATGGAAACACATTGAACTACTTTGGCAAGAAC
genomic: CAAATATGGCGCTAACTGTGGCCCTGAAGCTGTCTGGTTTAAGgttcttgcct ... ctgattgcagACTGGTGCTTTGCTTCTTGATGGAAACACATTGAACTACTTTGGCAAGAAC
EST: gi|125100638|gb|EL156016.1|EL156016
EST:     CTGTCTGGTTTAAG                         ACTGGTGCTTTGCTTCTTGATGGAAACACATTGAACTACTTTGGCAAGAAC
genomic: CTGTCTGGTTTAAGgttcttgcct ... ctgattgcagACTGGTGCTTTGCTTCTTGATGGAAACACATTGAACTACTTTGGCAAGAAC
EST: gi|125282502|gb|EL296587.1|EL296587
EST:     AAGCTGTCTGGTTTAAG                         ACTGGTGCTTTGCTTCTTGATGGAAACACATTGAACTACTTTGGCAAGAAC
genomic: AAGCTGTCTGGTTTAAGgttcttgcct ... ctgattgcagACTGGTGCTTTGCTTCTTGATGGAAACACATTGAACTACTTTGGCAAGAAC
EST: gi|124992584|gb|EL064853.1|EL064853
EST:     TCTGGTTTAAG                         ACTGGTGCTTTGCTTCTTGATGGAAACACATTGAACTACTTTGGCAAGAAC
genomic: TCTGGTTTAAGgttcttgcct ... ctgattgcagACTGGTGCTTTGCTTCTTGATGGAAACACATTGAACTACTTTGGCAAGAAC
EST: gi|125275931|gb|EL290016.1|EL290016
EST:     TTTAAACAAATATGGCGCTAACTGTGGCCCTAGAAGCTGTCTGGTTTAAG                         ACTGGTGCTTT
genomic: TTTAAACAAATATGGCGCTAACTGTGGCCCT-GAAGCTGTCTGGTTTAAGgttcttgcct ... ctgattgcagACTGGTGCTTT
EST: gi|125149713|gb|EL182732.1|EL182732
EST:     GGCGCTAACTGTGGCCCTGAAGCTGTCTGGTTTAAG                         ACTGGTGCTTTGCTTCTTGATGGAAACACATTGAACTACTTTGGCAAGAAC
genomic: GGCGCTAACTGTGGCCCTGAAGCTGTCTGGTTTAAGgttcttgcct ... ctgattgcagACTGGTGCTTTGCTTCTTGATGGAAACACATTGAACTACTTTGGCAAGAAC
EST: gi|124949308|gb|EL024941.1|EL024941
EST:     CCCTGAAGCTGTCTGGTTTAAG                         ACTGGTGCTTTGCTTCTTGATGGAAGCACATTGAACTACTTTGGCAAGAAC
genomic: CCCTGAAGCTGTCTGGTTTAAGgttcttgcct ... ctgattgcagACTGGTGCTTTGCTTCTTGATGGAAACACATTGAACTACTTTGGCAAGAAC
EST: gi|125151207|gb|EL183459.1|EL183459
EST:     CTTTAAACAAATATGGCGCTAACTGTGGCCCTGAAGCTGTCTGGTTTAAG                         ACTGGTGCTTTGCTTCTTGATGG
genomic: CTTTAAACAAATATGGCGCTAACTGTGGCCCTGAAGCTGTCTGGTTTAAGgttcttgcct ... ctgattgcagACTGGTGCTTTGCTTCTTGATGG
EST: gi|124814931|gb|EH899797.1|EH899797
EST:     GTGGCCCTGAAGCTGTCTGGTTTAAG                         ACTGGTGCTTTGCTTCTTGATGGAAACACATTGAACTACTTTGGCAAG
genomic: GTGGCCCTGAAGCTGTCTGGTTTAAGgttcttgcct ... ctgattgcagACTGGTGCTTTGCTTCTTGATGGAAACACATTGAACTACTTTGGCAAG
EST: gi|116399289|gb|EG441881.1|EG441881
EST:     CTTTAAACAAATATGGCGCTAACTGTGGCCCTGAAGCTGTCTGGTTTAAG                         ACTGGTGCTTTGCTTCTTGATGGAAACACATTGAACTACTTTGGCAAGAAC
genomic: CTTTAAACAAATATGGCGCTAACTGTGGCCCTGAAGCTGTCTGGTTTAAGgttcttgcct ... ctgattgcagACTGGTGCTTTGCTTCTTGATGGAAACACATTGAACTACTTTGGCAAGAAC
EST: gi|124941983|gb|EL018289.1|EL018289
EST:     CTTTAAACAAATATGGCGCTAACTGTGGCCCTGAAGCTGTCTGGTTTAAG                         ACTGGTGCTTTGCTTCTTGATGGAAACACA
genomic: CTTTAAACAAATATGGCGCTAACTGTGGCCCTGAAGCTGTCTGGTTTAAGgttcttgcct ... ctgattgcagACTGGTGCTTTGCTTCTTGATGGAAACACA
EST: gi|125129775|gb|EL173362.1|EL173362
EST:     GCTGTCTGGTTTAAG                         ACTGGTGCTTTGCTTCTTGATGGAAACACATTGAACTACTTTGGCAAGAAC
genomic: GCTGTCTGGTTTAAGgttcttgcct ... ctgattgcagACTGGTGCTTTGCTTCTTGATGGAAACACATTGAACTACTTTGGCAAGAAC
EST: gi|125239900|gb|EL253985.1|EL253985
EST:     CTGTCTGGTTTAAG                         ACTGGTGCTTTGCTTCTTGATGGAAACACATTGAACTACTTTGGCAAGAAC
genomic: CTGTCTGGTTTAAGgttcttgcct ... ctgattgcagACTGGTGCTTTGCTTCTTGATGGAAACACATTGAACTACTTTGGCAAGAAC
EST: gi|124998160|gb|EL070429.1|EL070429
EST:     GTGGCCCTGAAGCTGTCTGGTTTAAG                         ACTGGTTGCTTTGCTTCTTGATGGAAACACATTGAACTACTTTGGCAAGAA
genomic: GTGGCCCTGAAGCTGTCTGGTTTAAGgttcttgcct ... ctgattgcagACTGG-TGCTTTGCTTCTTGATGGAAACACATTGAACTACTTTGGCAAGAA
EST: gi|125206766|gb|EL221720.1|EL221720
EST:     TTAAACAAATATGGCGCTAACTGTGGCCCTGAAGCTGTCTGGTTTAAG                         ACTGGTGCTTTGCTTCTTGATGGAAACACATTGAACTACTTTGGCAAGAAC
genomic: TTAAACAAATATGGCGCTAACTGTGGCCCTGAAGCTGTCTGGTTTAAGgttcttgcct ... ctgattgcagACTGGTGCTTTGCTTCTTGATGGAAACACATTGAACTACTTTGGCAAGAAC
EST: gi|124825850|gb|EH910716.1|EH910716
EST:     CTTTAAACAAATATGGCGCTAACTGTGGCCCTGAAGCTGTCTGGTTTAAG                         ACTGGTGCTTTGCTTCTTGATGGAAACACATTGAACTACTT-GGCAAGAAC
genomic: CTTTAAACAAATATGGCGCTAACTGTGGCCCTGAAGCTGTCTGGTTTAAGgttcttgcct ... ctgattgcagACTGGTGCTTTGCTTCTTGATGGAAACACATTGAACTACTTTGGCAAGAAC
EST: gi|125308464|gb|EL322549.1|EL322549
EST:     TTTAAACAAATATGGCGCTAACTGTGGCCCTGAAAGCTGTCTGGTTTAAG                         ACTGGTGCTTTGCTTCTTGATGGAAACACATTGAACT
genomic: TTTAAACAAATATGGCGCTAACTGTGGCCCTG-AAGCTGTCTGGTTTAAGgttcttgcct ... ctgattgcagACTGGTGCTTTGCTTCTTGATGGAAACACATTGAACT
EST: gi|164218088|gb|ES123636.1|ES123636
EST:     CTTTAAACAAATATGGCGCTAACTGTGGCCCTGAAGCTGTCTGGTTTAAG                         ACTGGTGCTTTGC
genomic: CTTTAAACAAATATGGCGCTAACTGTGGCCCTGAAGCTGTCTGGTTTAAGgttcttgcct ... ctgattgcagACTGGTGCTTTGC
EST: gi|125243949|gb|EL258034.1|EL258034
EST:     CTTTAAACAAATATGGCGCTAACTGTGGCCCTGAAGCTGTCTGGTTTAAG                         ACCGGTGCTTTGCTTCTTGATGGAAACACATTGAACTACTTTGG
genomic: CTTTAAACAAATATGGCGCTAACTGTGGCCCTGAAGCTGTCTGGTTTAAGgttcttgcct ... ctgattgcagACTGGTGCTTTGCTTCTTGATGGAAACACATTGAACTACTTTGG
EST: gi|86059765|gb|DR355522.1|DR355522
EST:     CTTTAAACAAATATGGCGCTAACTGTGGCCCTGAAGCTGTCTGGTTTAAG                         ACTGGTGCTTTGCTTCTTGATGGAAACACATTGAACTACTTTGGCAAGAAC
genomic: CTTTAAACAAATATGGCGCTAACTGTGGCCCTGAAGCTGTCTGGTTTAAGgttcttgcct ... ctgattgcagACTGGTGCTTTGCTTCTTGATGGAAACACATTGAACTACTTTGGCAAGAAC
EST: gi|124993521|gb|EL065790.1|EL065790
EST:     TGGCCCTGAAGCTGTCTGGTTTAAG                         ACTGGTTTGCTTTGCTTCTTGATGGAAACACATTGAACTACTTTGGCAAGA
genomic: TGGCCCTGAAGCTGTCTGGTTTAAGgttcttgcct ... ctgattgcagACTGG--TGCTTTGCTTCTTGATGGAAACACATTGAACTACTTTGGCAAGA
EST: gi|125100183|gb|EL155735.1|EL155735
EST:     CTAACTGTGGCCCTGAAGCTGTCTGGTTTAAG                         ACTGGTGCTTTGCTTCTTGATGGAAACACATTGAACTACTTTGGCAAGAAC
genomic: CTAACTGTGGCCCTGAAGCTGTCTGGTTTAAGgttcttgcct ... ctgattgcagACTGGTGCTTTGCTTCTTGATGGAAACACATTGAACTACTTTGGCAAGAAC
EST: gi|125248888|gb|EL262973.1|EL262973
EST:     CTTTAAACAAATATGGCGCTAACTGTGGCCCTGAAGCTGTCTGGTTTAAG                         ACTGGTGCTTTGCTTCTTGATGGAAACACATTGAACTACTTTGG
genomic: CTTTAAACAAATATGGCGCTAACTGTGGCCCTGAAGCTGTCTGGTTTAAGgttcttgcct ... ctgattgcagACTGGTGCTTTGCTTCTTGATGGAAACACATTGAACTACTTTGG
EST: gi|125098098|gb|EL154349.1|EL154349
EST:     TTTAAACAAAATATGGCGCTAACTGTGGCCCTGAAGCTGTCTGGTTTAAG                         ACTGGTGCTTTGCTT
genomic: TTTAAAC-AAATATGGCGCTAACTGTGGCCCTGAAGCTGTCTGGTTTAAGgttcttgcct ... ctgattgcagACTGGTGCTTTGCTT
EST: gi|124845525|gb|EH929962.1|EH929962
EST:     TGGCCCTGAAGCTGTCTGGTTTAAG                         ACTGGTGCTTTGCTTCTTGATGGAAACACATTGAACTACTTTGGCAAGAAC
genomic: TGGCCCTGAAGCTGTCTGGTTTAAGgttcttgcct ... ctgattgcagACTGGTGCTTTGCTTCTTGATGGAAACACATTGAACTACTTTGGCAAGAAC
EST: gi|125244534|gb|EL258619.1|EL258619
EST:     ATGGCGCTAACTGTGGCCCTGAAGCTGTCTGGTTTAAG                         ACTGGTGCTTTGCTTCTTGATGGAAACACATTGAACTACTTTGGCAAGAAC
genomic: ATGGCGCTAACTGTGGCCCTGAAGCTGTCTGGTTTAAGgttcttgcct ... ctgattgcagACTGGTGCTTTGCTTCTTGATGGAAACACATTGAACTACTTTGGCAAGAAC
EST: gi|125245531|gb|EL259616.1|EL259616
EST:     ACAAATATGGCGCTAACTGTGGCCCTGAAGCTGTCTGGTTTAAG                         ACTGGTGCTTTGCTTCTTGATGGAAACACATTGAACTACTTTGGCAAGAAC
genomic: ACAAATATGGCGCTAACTGTGGCCCTGAAGCTGTCTGGTTTAAGgttcttgcct ... ctgattgcagACTGGTGCTTTGCTTCTTGATGGAAACACATTGAACTACTTTGGCAAGAAC
EST: gi|125035469|gb|EL107738.1|EL107738
EST:     TGGCCCCGAAGCTGTCTGGTTTAAG                         ACTGGTGCTTTGCTTCTTGATGGAAACACATTGAACTACTTTGGCAAGAAC
genomic: TGGCCCTGAAGCTGTCTGGTTTAAGgttcttgcct ... ctgattgcagACTGGTGCTTTGCTTCTTGATGGAAACACATTGAACTACTTTGGCAAGAAC
EST: gi|124863782|gb|EH948219.1|EH948219
EST:     CTTTAAACAAATATGGCGCTAACTGTGGCCCTGAAGCTGTCTGGTTTAAG                         ACTGGTGCTTTGCTTCTTGATGGAAACACATTGAA
genomic: CTTTAAACAAATATGGCGCTAACTGTGGCCCTGAAGCTGTCTGGTTTAAGgttcttgcct ... ctgattgcagACTGGTGCTTTGCTTCTTGATGGAAACACATTGAA
EST: gi|124781821|gb|EH871764.1|EH871764
EST:     TTTAAAACAAATATGGCGCTAACTGTGGCCCTGAAGCTGTCTGGTTTAAG                         ACTGGTGCTTTG
genomic: TTT-AAACAAATATGGCGCTAACTGTGGCCCTGAAGCTGTCTGGTTTAAGgttcttgcct ... ctgattgcagACTGGTGCTTTG
EST: gi|124909832|gb|EH983912.1|EH983912
EST:     TATGGCGCTAACTGTGGCCCTGAAGCTGTCTGGTTTAAG                         ACTGGTGCTTTGCTTCTTGATGGAAACACATTGAACTACTTTGGCAAGAAC
genomic: TATGGCGCTAACTGTGGCCCTGAAGCTGTCTGGTTTAAGgttcttgcct ... ctgattgcagACTGGTGCTTTGCTTCTTGATGGAAACACATTGAACTACTTTGGCAAGAAC
EST: gi|124821079|gb|EH905945.1|EH905945
EST:     CTTTAAACAAATATGGCGCTAACTGTGACCCTGAAGCTGTCTGGTTTAAG                         ACTGGTGCTTTGCTTCTTGATGG
genomic: CTTTAAACAAATATGGCGCTAACTGTGGCCCTGAAGCTGTCTGGTTTAAGgttcttgcct ... ctgattgcagACTGGTGCTTTGCTTCTTGATGG
EST: gi|86080759|gb|DR376516.1|DR376516
EST:     CTTTAAACAAATATGGCGCTAACTGTGGCCCTGAAGCTGTCTGGTTTAAG                         ACTGGTGCTTTGCTTCTTGATGGAAACACATTGAACTACTTTGGCAAGAAC
genomic: CTTTAAACAAATATGGCGCTAACTGTGGCCCTGAAGCTGTCTGGTTTAAGgttcttgcct ... ctgattgcagACTGGTGCTTTGCTTCTTGATGGAAACACATTGAACTACTTTGGCAAGAAC
EST: gi|124800547|gb|EH890212.1|EH890212
EST:     AAGCTGTCTGGTTTAAG                         ACTGGTGCTTTGTCTTCTTGATGGAAACACATTGAACTACTTTGGCAAGAA
genomic: AAGCTGTCTGGTTTAAGgttcttgcct ... ctgattgcagACTGGTGCTTTG-CTTCTTGATGGAAACACATTGAACTACTTTGGCAAGAA
EST: gi|124955539|gb|EL030544.1|EL030544
EST:     ATGGCGCTAACTGTGGCCCTGAAGCTGTCTGGTTTAAG                         ACTGGTGCTTTGCTTCTTGATGGAAACACATTGAACTACTTTGGCAAGAAC
genomic: ATGGCGCTAACTGTGGCCCTGAAGCTGTCTGGTTTAAGgttcttgcct ... ctgattgcagACTGGTGCTTTGCTTCTTGATGGAAACACATTGAACTACTTTGGCAAGAAC
EST: gi|125253233|gb|EL267318.1|EL267318
EST:     CTTTAAACAAATATGGCGCTAACTGTGGCCCTGAAGCTGTCTGGTTTAAG                         ACTGGTGCTTTGCTTCTTGATGGAAACACATTGAACT
genomic: CTTTAAACAAATATGGCGCTAACTGTGGCCCTGAAGCTGTCTGGTTTAAGgttcttgcct ... ctgattgcagACTGGTGCTTTGCTTCTTGATGGAAACACATTGAACT
EST: gi|125209367|gb|EL224321.1|EL224321
EST:     CTTTAAACAAATATGGCGCTAACTGTGGCCCTGAAGCTGTCTGGTTTAAG                         ACTGGTGCTTTGCTTCTTGATGGAAACACAT
genomic: CTTTAAACAAATATGGCGCTAACTGTGGCCCTGAAGCTGTCTGGTTTAAGgttcttgcct ... ctgattgcagACTGGTGCTTTGCTTCTTGATGGAAACACAT
EST: gi|124831518|gb|EH915957.1|EH915957
EST:     TGGCGCTAACTGTGGCCC-GAAGCTGTCTGGTTTAAG                         ACTGGTGCTTTGCTTCTTGATGGAAACACATTGAACTACTTTGGCAAGAAC
genomic: TGGCGCTAACTGTGGCCCTGAAGCTGTCTGGTTTAAGgttcttgcct ... ctgattgcagACTGGTGCTTTGCTTCTTGATGGAAACACATTGAACTACTTTGGCAAGAAC
EST: gi|125293039|gb|EL307124.1|EL307124
EST:     CTTTAAACAAATATGGCGCTAACTGTGGCCCTGAAGCTGTCTGGTTTAAG                         ACTGGTGCTTTGCTTCTTGATGGAAACACATTGAACT
genomic: CTTTAAACAAATATGGCGCTAACTGTGGCCCTGAAGCTGTCTGGTTTAAGgttcttgcct ... ctgattgcagACTGGTGCTTTGCTTCTTGATGGAAACACATTGAACT
EST: gi|124726606|gb|EH818008.1|EH818008
EST:     TGGCCCTGAAGCTGTCTGGTTTAAG                         ACTGGTGCTTTGCTTCTTGATGGAAACACATTGAACAACTTTGGCAAGAAC
genomic: TGGCCCTGAAGCTGTCTGGTTTAAGgttcttgcct ... ctgattgcagACTGGTGCTTTGCTTCTTGATGGAAACACATTGAACTACTTTGGCAAGAAC
EST: gi|125017289|gb|EL089558.1|EL089558
EST:     CGCTAACTGTGGCCCTGAAGCTGTCTGGTTTAAG                         ACTGGTGCTTTGCTTCTTGATGGAAACACATTGAACTACTTTGGCAAGAAC
genomic: CGCTAACTGTGGCCCTGAAGCTGTCTGGTTTAAGgttcttgcct ... ctgattgcagACTGGTGCTTTGCTTCTTGATGGAAACACATTGAACTACTTTGGCAAGAAC
EST: gi|124952255|gb|EL027541.1|EL027541
EST:     CTAACTGTGGCCCTGAAGCTGTCTGGTTTAAG                         ACTGGTGCTTTGCTTCTTGATGGAAACACATTGAACTACTTTGGCAAGAAC
genomic: CTAACTGTGGCCCTGAAGCTGTCTGGTTTAAGgttcttgcct ... ctgattgcagACTGGTGCTTTGCTTCTTGATGGAAACACATTGAACTACTTTGGCAAGAAC
EST: gi|125206866|gb|EL221820.1|EL221820
EST:     CTTTAAACAAATATGGCGCTAACTGTGGCCCTGAAGCTGTCTGGTTTAAG                         ACTGGTGCTTTGCTTCTTGATGGAAAC
genomic: CTTTAAACAAATATGGCGCTAACTGTGGCCCTGAAGCTGTCTGGTTTAAGgttcttgcct ... ctgattgcagACTGGTGCTTTGCTTCTTGATGGAAAC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CCATGCGAGATGGGCTATGTTAGGAGCAGCTGGTTTCATCATTCCTGAAGCTTTAAACAAATATGGCGCTAACTGTGGCCCTGAAGCTGTCTGGTTTAAGgttcttgcctacgtctaatctttatttacattcagacttagattctttagcaaagcaagaatgtgttgatgtgatgagatggttctttttggaatactgattgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGCTG