Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATCAGCAAATATCGGAGTATTCATTTGCTTAAAATGTTGCGGTGTGCACAGGAGCCTCGGCACTCATATTTCAAAGgtgatatatcttctttgctctattacatattggttgtccatttgttgtctcttttcttcattactcaagacaaaattagatctctttcgttgtgtactcattgtttggtttctccag

Basic information

species Arabidopsis thaliana
transcript AT4G05330.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G05330.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: LOC_Os02g10480.3 (Oryza sativa), 5'ss of exon 5
ATCAGCAAATATCGGAGTATTCATTTGCTTAAAATGTTGCGGTGTGCACAGGAGCCTCGGCACTCATATTTCAAAGgtgatatatcttctttgctctattacatattggttgtccatttgttgtctcttttcttcattactcaag---acaaaattagatctctttcgttgtgtactcattgtttggtttctccag------------------------------------------------------------
|||||| ||||| ||||||||||| ||| | || |||| |||||| ||||| || || ||||| || |||||||||||    |   |   ||||  ||| | ||| ||  | |  || | || ||   ||||||    | |  |    |  || ||        ||    |  ||  ||  |||||   |  | |                                                             
ATCAGCTAATATAGGAGTATTCATATGCCTCAAGTGTTCCGGTGTTCACAGAAGTCTTGGCACACACATTTCAAAGgt----ttcttcaattgcaatat-agatagtg-ctataaatcttttttcatctttcttatccaattgaattcagcaagtttttctgtatttacagcataggcaaagtttgcactgacaattatggcatattatacatcatgttttgagcataatcaccattcagtatttgttttgagcag

upper sequence: AT4G05330.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GRMZM2G071582_T02 (Zea mays), 5'ss of exon 4
ATCAGCAAATATCGGAGTATTCATTTGCTTAAAATGTTGCGGTGTGCACAGGAGCCTCGGCACTCATATTTCAAAGgtgatatatcttctttgctctattacatattggttgtccatttgttgtctcttttcttcattactcaagacaaaattagatctctttcgttgtgtactcattgtttggtttctccag
||| || || || ||||||||||||||| |||| ||||  ||||| ||||| |||||||| || ||| |||||||||| ||   || |  | | |  |    |   |  || |   | |  ||   ||  | |  | ||  | ||   |  ||   |   ||   |||  |   ||  |              
ATCGGCTAACATTGGAGTATTCATTTGCCTAAAGTGTTCTGGTGTTCACAGAAGCCTCGGGACACATGTTTCAAAGgttat---tcattgtagatagaaataaagctaattcttgctcttgtgcacctagtatg-agtatgcgag-tgaggttctcttgtttcaattggctttacaacgac------------

upper sequence: AT4G05330.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GRMZM2G138349_T03 (Zea mays), 5'ss of exon 4
ATCAGCAAATATCGGAGTATTCATTTGCTTAAAATGTTGCGGTGTGCACAGGAGCCTCGGCACTCATATTTCAAAGgtgatatatcttctttgctctattacatattggttgtccatttgttgtctcttttcttc-attactcaagacaaaattagatctctttcgttgtgtactcattgtttggtttctccag
|||||| ||||| || |||||||||||| |||||||||  || || || || || ||||| || ||||||||||||||    | |  |  |  | | | || |    |    | | ||   ||| |||||  ||| |||  ||    |    || | |   |||    || || | | |||             
ATCAGCTAATATTGGGGTATTCATTTGCGTAAAATGTTCTGGCGTCCATAGAAGTCTCGGTACACATATTTCAAAGgt----ttttgtagtcacac-actaaaaccagaaattaccttacatgtttctttctttctatttttctttcctttttttgtttgtttttagagtttatt-actgtc------------

upper sequence: AT4G05330.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA09G02830.1 (Glycine max), 5'ss of exon 4
ATCAGCAAATATCGGAGTATTCATTTGCTTAAAATGTTGCGGTGTGCACAGGAGCCTCGGCACTCATATTTCAAAGgtgatatatcttctttgctctattacatattggttgtccatttgttgtctcttttcttcattactcaagacaaa--attagatctctttcg-ttgtgtact-cattgtttggtttctccag
 || || || || ||||| || || |||||||||||||||||||||||||| ||||| || |||||||| |||||||| |                 |  |   || |||||||   ||||| |    |   ||   | | |    ||||  ||||  | || |    ||||  | |   || |||| |||      
GTCTGCCAACATTGGAGTTTTTATATGCTTAAAATGTTGCGGTGTGCACAGAAGCCTTGGTACTCATATATCAAAGgtaa-----------------accattcataggttgtctcattgttatggaatgcattt-ctgcccggatcaaagaattatttttcctctaattgtaaaatattttatttgatttaat---

upper sequence: AT4G05330.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA15G13700.1 (Glycine max), 5'ss of exon 4
ATCAGCAAATATCGGAGTATTCATTTGCTTAAAATGTTGCGGTGTGCACAGGAGCCTCGGCACTCATATTTCAAAGgtgatatatcttctttgctctattacatattggttgtccatttgttgtctcttttcttcattactcaagacaaaattagat---ctctttcgttgtgtactcattgtttggtttctccag
 || || || || ||||| || || |||||||||||||| ||||||||||| ||||| || |||||||| |||||||| |   ||   | | |  | |  |   || ||||||| ||| ||| |        ||  |  ||     ||||     ||   | || |  ||||  | |                   
GTCTGCCAACATTGGAGTTTTTATATGCTTAAAATGTTGTGGTGTGCACAGAAGCCTTGGTACTCATATATCAAAGgtaaaccattcacat-gtaccaccattcataggttgtctatt-gttatggaaggcatttctgccttggatcaaagacttattttccctctaattgtaaaata------------------

upper sequence: AT4G05330.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA05G29940.1 (Glycine max), 5'ss of exon 2
ATCAGCAAATATCGGAGTATTCATTTGCTTAAAATGTTGCGGTGTGCACAGGAGCCTCGGCACTCATATTTCAAAGgtgatatatcttctttgctctattacatattggttgtccatttgttgtctcttttcttcattactcaagacaaaattagatctctttcgttgtgtactcattgtttggtttctccag
 ||||| ||||| ||||| ||  | |||||||||||||| ||||||||||| || || ||| |||| || |||||||| |    | ||| |    |  |||    ||        |  | ||  || |  |  | |  | |  | ||  | ||     ||||   |||| |||      ||            
GTCAGCCAATATTGGAGTTTTTGTATGCTTAAAATGTTGTGGTGTGCACAGAAGTCTTGGCTCTCAAATATCAAAGgtaac---tattcctaatccacttaagagtttagaaagaagattttcactttactaataaggaatttaaactgagttc--cttcttcgtttgtctacaacaaatt------------

upper sequence: AT4G05330.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA08G13070.1 (Glycine max), 5'ss of exon 2
ATCAGCAAATATCGGAGTATTCATTTGCTTAAAATGTTGCGGTGTGCACAGGAGCCTCGGCACTCATATTTCAAAGgtga-tatatcttctttgctctattacatattggttgtccatttgttgtctcttttcttcattactcaagacaaaattagatctctttcgttgtgtactcattgtttggtttctccag
 ||||| ||||| ||||| ||| | ||||||||||| || ||||||||||| || || ||| |||| || |||||||| | |||  ||  |   || || || ||| |             || || |||| ||  | ||   ||   ||| | || ||  | |   | |||    |                 
GTCAGCCAATATTGGAGTTTTCGTATGCTTAAAATGCTGTGGTGTGCACAGAAGTCTTGGCTCTCAGATATCAAAGgtaactattcctgatccactttactaaatagtttagaaaagaagattttcactttact--aataaggaatttaaactgagttccttcttcatttgtctagaa----------------

upper sequence: AT4G05330.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: Vv10s0003g04900.t01 (Vitis vinifera), 5'ss of exon 4
ATCAGCAAATATCGGAGTATTCATTTGCTTAAAATGTTGCGGTGTGCACAGGAGCCTCGGCACTCATATTTCAAAGgtgatatatcttctttgctctattacatattggttgtccatttgttgtctcttttcttcattactcaagacaaaattagatctctttcgttgtgtactcattgtttggtttctccag
 || |||||||| ||||| || || |||||||||||||| ||||||||||| ||||| || || ||||| ||||||||       ||  | |    |  ||  || |  |  || ||   |  |    | | |   ||  |    |     |||    | |||  || ||||||     |             
GTCTGCAAATATTGGAGTCTTTATATGCTTAAAATGTTGTGGTGTGCACAGAAGCCTTGGTACACATATCTCAAAGgtagctgccctattattgcttcgtatttagttatcatc-atgcatcatagtgtatgtgttttcttttttatcttttta---ttttttatttttgtactggaaat-------------