Sequence
atgc intronic sequence ATGC exonic sequenceGAAAACCCGCGTCTATCCGCTATGGGACGGGTGCTATTTCTGGTTACTTTAGCAATGATGATGTTAAAGTTGGTGATATTGTTGTGAAAGAGCAGgtaaaacgattcatccgcttacatatttcagaatattcatgtgagttaatatctaactgctacatctatatatcaccacag
Basic information
species | Arabidopsis thaliana |
transcript | AT4G04460.2 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT4G04460.2 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA09G00810.1 (Glycine max), 5'ss of exon 3
GAAAACCCGCGTCTATCCGCTATGGGACGGGTGCTATTTCTGGTTACTTTAGCAATGATGATGTTAAAGTTGGTGATATTGTTGTGAAAGAGCAGgtaaaacgattcat-----ccgcttacatatttcagaatattcatgtgagttaa-tatctaactgctacatctatatatcaccacag-----------------------------------------------
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GTACTTCTGCTGCAATTCAATATGGTACTGGAGCAATTTCTGGTTTCTTTAGCAATGACGATGTCAAAGTTGGTGACATAGTTGTAAAGGACCAGgtaatactaattgtcaatccctatttcatttttcttttccttcacaccaacaaagtgtgatgtcagttgagttggcttctttcataatatgttgattaatcaattaacatgaagtatgttttaatcttcattag
upper sequence: AT4G04460.2 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA15G11670.1 (Glycine max), 5'ss of exon 3
GAAAACCCGCGTCTATCCGCTATGGGACGGGTGCTATTTCTGGTTACTTTAGCAATGATGATGTTAAAGTTGGTGATATTGTTGTGAAAGAGCAGgtaaaacgattcatccgcttacatatt-tcagaatattcatgtgagttaatatctaactgctacatctatatatcaccacag--------------------------------------------
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GTACTTCTGCTGCAATTCAATATGGTACTGGAGCAATTTCTGGTTTCTTTAGCAATGACGATGTCAAAGTTGGTGACATAGTTGTAAAGGACCAGgtaatgatgattgtcaatccctatttcatttttcttttccttcacaccaacatgtcagttgagttggcttctttcataataagttgattaatcaattaacgtgaagtatgttttgatctccattagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|86060862|gb|DR356619.1|DR356619EST: GATATTGTTGTGAAAGAGCAG GAATTCATAGAGGCTACTAGTGAGCCTGGTATAACATTCTTGCTAGCAAAG
genomic: GATATTGTTGTGAAAGAGCAGgtaaaacgat ... atcaccacagGAATTCATAGAGGCTACTAGTGAGCCTGGTATAACATTCTTGCTAGCAAAG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GAAAACCCGCGTCTATCCGCTATGGGACGGGTGCTATTTCTGGTTACTTTAGCAATGATGATGTTAAAGTTGGTGATATTGTTGTGAAAGAGCAGgtaaaacgattcatccgcttacatatttcagaatattcatgtgagttaatatctaactgctacatctatatatcaccacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG