1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
CCAAAGAATGTCTCTGAAGCTGAAGTTCAATCTTTATTCTCCAAGTACGGGACCATAAAGGATCTACAGATTCTAAGAGGTGCTCAACAAACGAGCAAAGgttgaatctatctctgtgtcgctattgtgatctttggtttcactagtttgctttacctagttttgaccttttgtttgttgtcgatgtttag
species | Arabidopsis thaliana |
transcript | AT4G03110.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: GACCATAAAGGATCTACAGATTCTAAGAGGTGCTCAACAAACGAGCAAAG GCTGTGCATTTCTGAAGTATGAGAEST: gi|47827965|gb|CK117649.1|CK117649
genomic: GACCATAAAGGATCTACAGATTCTAAGAGGTGCTCAACAAACGAGCAAAGgttgaatcta ... cgatgtttagGCTGTGCATTTCTGAAGTATGAGA
EST: GACCATAAAGGATCTACAGATTCTAAGAGGTGCTCAACAAACGAGCAAAG GCTGTGCTTTTCTTAAGTATGAGACAAAAGAACAAGCTGTTTCTGCCATGGEST: gi|124779833|gb|EH869776.1|EH869776
genomic: GACCATAAAGGATCTACAGATTCTAAGAGGTGCTCAACAAACGAGCAAAGgttgaatcta ... cgatgtttagGCTGTGCATTTCTGAAGTATGAGACAAAAGAACAAGCTGTTTCCGCCATGG
EST: AGGTGCTCAACAAACGAGCAAAG GCTGTGCATTTCTGAAGTATGAGACAAAAGAACAAGCTGTTTCCGCCATGG
genomic: AGGTGCTCAACAAACGAGCAAAGgttgaatcta ... cgatgtttagGCTGTGCATTTCTGAAGTATGAGACAAAAGAACAAGCTGTTTCCGCCATGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCAAAGAATGTCTCTGAAGCTGAAGTTCAATCTTTATTCTCCAAGTACGGGACCATAAAGGATCTACAGATTCTAAGAGGTGCTCAACAAACGAGCAAAGgttgaatctatctctgtgtcgctattgtgatctttggtttcactagtttgctttacctagttttgaccttttgtttgttgtcgatgtttag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG