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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACCGATAGAGCTGCTATGATCGATGAGATTGTCGATTATGTAAAGTTTCTCAGGCTCCAAGTCAAGgtatattcttctctcttctgcagttttaaactcgaactctctttcttgtgaattatcttattactccctatgcaatatgtttaatctgtttgttcataag...

Basic information

species Arabidopsis thaliana
transcript AT4G02590.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G02590.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GRMZM2G004356_T01 (Zea mays), 5'ss of exon 5
ACCGATAGAGCTGCTATGATCGATGAGATTGTCGATTATGTAAAGTTTCTCAGGCTCCAAGTCAAGgtatattcttctctcttctgcagttttaaactcgaactctctttcttgtgaattatcttattactccctatgcaatatgtttaatctgtttgttcataag
|| |||||||| |||||| | ||||||||  | |||||||| |||||||| ||||| |||||||||||  |      | |  |   ||  ||| ||     | |  ||  |   ||| |||  |  ||  || ||       |  || | |||||    | |    
ACAGATAGAGCAGCTATGCTAGATGAGATCCTAGATTATGTGAAGTTTCTGAGGCTTCAAGTCAAGgttcagctcattatgcta-acatctttgaatc---attaactaccagttgagttacttgtttgatcactg-atgggaccttgattctgtaacattag---

upper sequence: AT4G02590.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: Vv07s0141g00220.t01 (Vitis vinifera), 5'ss of exon 4
ACCGATAGAGCTGCTATGATCGATGAGATTGTCGATTATGTAAAGTTTCTCAGGCTCCAAGTCAAGgtatattctt-----ctctcttctgcagttttaaactcgaactctcttt-cttgtgaattatcttattactccctatgcaatatgtttaatctgtttgttcataag
|| ||||||||||| ||| | ||||| ||||| |||||||| || || || ||||||||||| |||||| | |        |  ||||||| ||||  | | | ||| | | |||  || |   || |   |||| ||    ||   ||    |||||  |      |||  
ACGGATAGAGCTGCAATGCTTGATGAAATTGTGGATTATGTGAAATTCCTAAGGCTCCAAGTAAAGgtaaagtgacacaaccattcttctgaagtt--agaattgaattttatttatttattggtttttaaatta-tctagttgttttac-cataatcaatccaaaaata--
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164230561|gb|ES068884.1|ES068884
EST:     TCCAAGTCAAG                         GTTTTGAGCATGAGCCGACTTGGTGGAGCCGGTGCGGTTGCTCCACTTGTT
genomic: TCCAAGTCAAGgtatattctt ... actttggtagGTTTTGAGCATGAGCCGACTTGGTGGAGCCGGTGCGGTTGCTCCACTTGTT
EST: gi|116435549|gb|EG478141.1|EG478141
EST:     TGATCGATGAGATTGTCGATTATGTAAAGTTTCTCAGGCTCCAAGTCAAG                         GTTTTGAGCATGAGCCGACTTGGTGGAGCCGGTGCGGTTGCTCCACTTGTT
genomic: TGATCGATGAGATTGTCGATTATGTAAAGTTTCTCAGGCTCCAAGTCAAGgtatattctt ... actttggtagGTTTTGAGCATGAGCCGACTTGGTGGAGCCGGTGCGGTTGCTCCACTTGTT