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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTACATAAAAATCAATGGACAAATCCTTGGAGCTGCTGAATATGATAACACTTTTGGTTGGGATAACAAGCACGCTGGTGCCAGAATCCTTCTTACTAAGgtaaaatctaaatttataaagttttgttatatcaagtccctaattatttttgttggttttttttttgtgtaaag

Basic information

species Arabidopsis thaliana
transcript AT4G02290.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G02290.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA10G02130.1 (Glycine max), 5'ss of exon 5
TTACATAAAAATCAATGGACAAATCCTTGGAGCTGCTGAATATGATAACACTTTTGGTTGGGATAACAAGCACGCTGGTGCCAGAATCCTTCTTACTAAGgtaaaatctaa--atttataaa----gttttgttatat-caagtccctaattatttttgttggt-----tttttttttgtgtaaag----------------------------
 ||||| ||| | ||||| || |||||||| ||||| || | ||| ||||| ||||| |||||||||||||| ||||| || ||||| |||||| | |||||| ||  ||   ||  || |      || || | |||  |  |  | ||      | |   ||      |  |  | || | ||                             
CTACATCAAAGTTAATGGCCAGATCCTTGGGGCTGCAGAGTTTGACAACACCTTTGGGTGGGATAACAAGCATGCTGGAGCAAGAATACTTCTTTCCAAGgtacaaattactcatccatcacatgtattctgctgtatatatattgcaaaactagatagaaagtaaaaactaataatggtttgaaatttacatttttgtgttccatggttttag

upper sequence: AT4G02290.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA02G01990.1 (Glycine max), 5'ss of exon 5
TTACATAAAAATCAATGGACAAATCCTTGGAGCTGCTGAATATGATAACACTTTTGGTTGGGATAACAAGCACGCTGGTGCCAGAATCCTTCTTACTAAGgt--aaaatctaaatttataaagt----tttgttatat----caagtcc--------------ctaattatt-tttgttggttttttttttgtgtaaag--------
 ||||| ||| | ||||| || |||||||| ||||| || | ||| ||||| ||||| |||||||||||||| ||||| || ||||| |||||| | |||||  ||||  ||| |  || |  |    | || | |||    |||  |               | ||| ||  ||||    ||   |||||||||            
CTACATCAAAGTTAATGGCCAGATCCTTGGGGCTGCAGAGTTTGACAACACCTTTGGGTGGGATAACAAGCATGCTGGAGCAAGAATACTTCTTTCCAAGgtccaaaaaataactccatcacatgtattctgctttatattgcaaaactagaaaaagtaaaaacaaataatggtttgaaatttacatttttgtgttccatgttttag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164167637|gb|ES127115.1|ES127115
EST:     CCTTCTTACAAAG                         GCATTTTTGGTTCAGAATGTGAAGACACTTCATGAATACAAAGGTCATGCT
genomic: CCTTCTTACTAAGgtaaaatcta ... ttgtgtaaagGCATTTTTGGTTCAGAATGTGAAGACACTTCATGAATACAAAGGTCATGCT