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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTCAAATGGCTGCTGAGATTAAAAATCTCGACACAGACTTGCAAATGCTAGTCTATGAAAATTACAACAAGTTTATCAGTGCAACAGATACAATCAAAAGgtacttgtaatggttcatggatcgtttcaggtgttaagtgtgtcatttaacacttttctctatatgatttgatttcaccactcggtagtatattaaattcaaaatgttgcttctttacctggtag

Basic information

species Arabidopsis thaliana
transcript AT4G02030.2
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G02030.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: LOC_Os03g52770.1 (Oryza sativa), 5'ss of exon 2
TTCAAATGGCTGCTGAGATTAAAAATCTCGACACAGACTTGCAAATGCTAGTCTATGAAAATTACAACAAGTTTATCAGTGCAACAGATACAATCAAAAGgtacttgtaatggttcatggatcgtttcaggtgttaagtgtgtcatttaacacttttctctatatgatttgatttcaccactcggtagtatattaaattcaaaatgttgcttctttacctggtag
|  | ||||| |||||||| || ||||| || |||||||| ||||||||||| ||||| ||||| |||||||||||||| ||||| || || || |||||||    ||  || |||          | ||   || | | |  ||| | || ||||||      | ||  | ||    ||   ||| || || |  | |  |||||||  |  |||  |||  ||
TGAAGATGGCCGCTGAGATCAAGAATCTGGATACAGACTTACAAATGCTAGTATATGAGAATTATAACAAGTTTATCAGCGCAACTGACACTATAAAAAGgt----gtgctgtttc---------cttagaccttca-tatcccatattactcttttcatctgctaataagtttgaggca---ggt-gtttactgtagttgaaatgtttgtgttttttctg-cag

upper sequence: AT4G02030.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GRMZM2G023858_T03 (Zea mays), 5'ss of exon 2
TTCAAATGGCTGCTGAGATTAAAAATCTCGACACAGACTTGCAAATGCTAGTCTATGAAAATTACAACAAGTTTATCAGTGCAACAGATACAATCAAAAGgtacttgtaatggttcatggatcgtttcaggtgttaagtgtgtcatttaacacttttctctatatgatttgatttcaccactcggtagtatattaaattcaaaatgttgcttctttacctggtag
|  | |||||| ||||||| || || || |||||||| || || |||||||| ||||| ||||| ||||||||||| |||||||| || || || |||||||  |  || |   | |  ||| |||     |  |   | ||| | | |   |  |   ||| ||| | | ||||         |||  || |  | | | |  | |   |  |||   |   ||
TGAAGATGGCTACTGAGATCAAGAACCTAGACACAGATTTACAGATGCTAGTGTATGAGAATTATAACAAGTTTATTAGTGCAACTGACACTATAAAAAGgtgatgctatttccttactgatagttcagacttctccttctgttaatgagttcgatgtacta-atgctattattttctatagttgtaacatgt--attgctatgtatctttgatttttttcacag

upper sequence: AT4G02030.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA02G01610.1 (Glycine max), 5'ss of exon 2
TTCAAATGGCTGCTGAGATTAAAAATCTCGACACAGACTTGCAAATGCTAGTCTATGAAAATTACAACAAGTTTATCAGTGCAACAGATACAATCAAAAGgtacttgtaatggttcatggatcgtttcaggtgttaagtgtgtcatttaacacttttctctatatgatttgatttcaccactcggtagtatattaaattcaaaatgttgcttctttacctggtag
||  |||||||||||| || || ||||||||||| ||||||||||||||||| || || |||||||||||||| |||||||| ||||| || || || |||| | | |    | | ||   |  |   ||   ||   | | || | |    || |    | | |   ||| || || |      | |  | | |||                            
TTGCAATGGCTGCTGAAATCAAGAATCTCGACACCGACTTGCAAATGCTAGTTTACGAGAATTACAACAAGTTCATCAGTGCCACAGACACTATAAAGAGgtgcgtat----gcttataagttat---agccatt---tctctcttctcttgctctatcgtgtctacattgtttgcatctaatatttgcttctcaaacag-------------------------

upper sequence: AT4G02030.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA10G01660.1 (Glycine max), 5'ss of exon 2
TTCAAATGGCTGCTGAGATTAAAAATCTCGACACAGACTTGCAAATGCTAGTCTATGAAAATTACAACAAGTTTATCAGTGCAACAGATACAATCAAAAGgtacttgtaatggttcatggatcgtttcaggtgttaagtgtgtcatttaacacttttctctatatgatttgatttcaccactcggtagtatattaaattcaaaatgttgcttctttacctggtag
|| ||||||| ||||| || || ||||||||||| |||||||||||||| || || || |||||||||||||| |||||||| ||||| || || || |||| ||| |  | ||  ||  | | ||||            | || | |    || |  | ||| | | |||  | || |      || ||| | |   | |||  |                   
TTGAAATGGCAGCTGAAATCAAGAATCTCGACACCGACTTGCAAATGCTGGTTTACGAGAATTACAACAAGTTCATCAGTGCTACAGACACTATAAAGAGgtgcttatgcttgtaaata-accatttc------------tatcttctcttgctctattgtatctaaattgtctgcatc------taatatttgattcttaaacag-------------------

upper sequence: AT4G02030.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: Vv07s0005g01440.t01 (Vitis vinifera), 5'ss of exon 2
TTCAAATGGCTGCTGAGATTAAAAATCTCGACACAGACTTGCAAATGCTAGTCTATGAAAATTACAACAAGTTTATCAGTGCAACAGATACAATCAAAAGgtacttgtaatggttcatggatcgtttcaggtgttaagtgtgtcatttaacacttttctctatatgatttgatttcaccactcggtagtatattaaattcaaaatgttgcttctttacctggtag
|| ||||||| |||||||| |||||||| ||||| |||||||| ||| |||| ||||||||||||||||||||||||||||| || || ||||| ||||||||      ||| | | |   |  || ||    | || | | |  | |     |||||  ||    | | | | | |        ||  ||    |  | | |||                    
TTGAAATGGCAGCTGAGATAAAAAATCTTGACACTGACTTGCAGATGTTAGTGTATGAAAATTACAACAAGTTTATCAGTGCCACTGAGACAATTAAAAGgta------atgttccct---tttttacatagttgaattttattttctttattttttcaataggcaaataggtataaatgaattataaaatgcctatataacaataaca----------------