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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTGTTCCTATTGTGAGCCATGATCCATCTTTGAAGCTACCTAAAGCTTTTGATGCTAGAACTGCTTGGCCACAGTGCACTAGTATTGGAAACATCTTAGgtttggttttatgcttttagctttttcctcacaattttagtgttcaattgcatttcgttattaactcttggtttttgtgtgtgtgtgttgactgctctatgaacag

Basic information

species Arabidopsis thaliana
transcript AT4G01610.1
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164022316|gb|ES112007.1|ES112007
EST:     TGATGCTAGAACTGCTTGGCCACAGTGCACTAGTATTGGAAACATCTTAG                         ATCAG
genomic: TGATGCTAGAACTGCTTGGCCACAGTGCACTAGTATTGGAAACATCTTAGgtttggtttt ... ctatgaacagATCAG
EST: gi|86059238|gb|DR354995.1|DR354995
EST:     TGATGCTAGAACTGCTTGGCCACAGTGCACTAGTATTGGAAACATCTTAG                         ATCAG
genomic: TGATGCTAGAACTGCTTGGCCACAGTGCACTAGTATTGGAAACATCTTAGgtttggtttt ... ctatgaacagATCAG
EST: gi|164234464|gb|ES093871.1|ES093871
EST:     TGATGCTAGAACTGCTTGGCCACAGTGCACTAGTATTGGAAACATCTTAG                         ATCAG
genomic: TGATGCTAGAACTGCTTGGCCACAGTGCACTAGTATTGGAAACATCTTAGgtttggtttt ... ctatgaacagATCAG
EST: gi|125309021|gb|EL323106.1|EL323106
EST:     TGATGCTAGAACTGCTTTGCCACAGTGCACTAGTATTGGAAACATCTTAG                         ATCAG
genomic: TGATGCTAGAACTGCTTGGCCACAGTGCACTAGTATTGGAAACATCTTAGgtttggtttt ... ctatgaacagATCAG
EST: gi|301501566|gb|HO207106.1|HO207106
EST:     TGATGCTAGAACTGCTTGGCCACAGTGCACTAGTATTGGAAACATCTTAG                         ATCAG
genomic: TGATGCTAGAACTGCTTGGCCACAGTGCACTAGTATTGGAAACATCTTAGgtttggtttt ... ctatgaacagATCAG
EST: gi|124839505|gb|EH923944.1|EH923944
EST:     TGATGCTAGAACTGCTTGGCCACAGTGCACTAGTATTGGAAACATCTTAG                         ATCAG
genomic: TGATGCTAGAACTGCTTGGCCACAGTGCACTAGTATTGGAAACATCTTAGgtttggtttt ... ctatgaacagATCAG
EST: gi|124902303|gb|EH976383.1|EH976383
EST:     TTGGCCACAGTGCACTAGTATTGGAAACATCTTAG                         ATCAG
genomic: TTGGCCACAGTGCACTAGTATTGGAAACATCTTAGgtttggtttt ... ctatgaacagATCAG
EST: gi|125286343|gb|EL300428.1|EL300428
EST:     TGATGCTAGAACTGCTTGGCCACAGTGCACTAGTATTGGAAACATCTTAG                         ATCAG
genomic: TGATGCTAGAACTGCTTGGCCACAGTGCACTAGTATTGGAAACATCTTAGgtttggtttt ... ctatgaacagATCAG
EST: gi|125292705|gb|EL306790.1|EL306790
EST:     CACTAGTATTGGAAACATCTTAG                         ATCAG
genomic: CACTAGTATTGGAAACATCTTAGgtttggtttt ... ctatgaacagATCAG
EST: gi|86059237|gb|DR354994.1|DR354994
EST:     CACAGTGCACTAGTATTGGAAACATCTTAG                         ATCAG
genomic: CACAGTGCACTAGTATTGGAAACATCTTAGgtttggtttt ... ctatgaacagATCAG
EST: gi|124734944|gb|EH826346.1|EH826346
EST:     TGCACTAGTATTGGAAACATCTTAG                         ATCAG
genomic: TGCACTAGTATTGGAAACATCTTAGgtttggtttt ... ctatgaacagATCAG
EST: gi|125315213|gb|EL329298.1|EL329298
EST:     TGATGCTAGAACTGCTTGGCCACAGTGCACTAGTATTGGAAACATCTTAG                         ATCAG
genomic: TGATGCTAGAACTGCTTGGCCACAGTGCACTAGTATTGGAAACATCTTAGgtttggtttt ... ctatgaacagATCAG