Sequence
atgc intronic sequence ATGC exonic sequenceTGATATTTGGTCTGTCGGTTGTATACTCGGTGAAACAATGACACGAGAGCCCTTGTTTCCCGGTAAAGATTATGTTCATCAGCTTAGACTCATCACTGAGgtaatctagtttagtatgtttcatccaaagaatcaccacttagtctctcttcacggtattaatgaatctttggaaagcag
Basic information
species | Arabidopsis thaliana |
transcript | AT4G01370.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT4G01370.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA16G03670.1 (Glycine max), 5'ss of exon 4
TGATATTTGGTCTGTCGGTTGTATACTCGGTGAAACAATGACACGAGAGCCCTTGTTTCCCGGTAAAGATTATGTTCATCAGCTTAGACTCATCACTGAGgta--atctagtttagtatgtttcatccaaagaatcaccacttagtctctcttcacggtattaatgaatctttggaaagcag------------------
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TGATATATGGTCTGTTGGTTGCATACTTGGTGAAATCATAACAAGACAACCGCTCTTTCCTGGCAAAGATTATGTTCATCAGCTGAGACTTATCACAGAGgtattagcttgattccaaactcctgaattagctagcataattatattaagactgattatgttcttgtttgtttgtatttcttttctctcttttagaactg
upper sequence: AT4G01370.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA07G07270.1 (Glycine max), 5'ss of exon 4
TGATATTTGGTCTGTCGGTTGTATACTCGGTGAAACAATGACACGAGAGCCCTTGTTTCCCGGTAAAGATTATGTTCATCAGCTTAGACTCATCACTGAGgtaat-ctagtttagtatgtttcatccaaagaa----tcaccacttagtctctcttcacggtattaatgaatctttggaaagcag---------------
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TGATATATGGTCTGTTGGTTGCATACTTGGTGAAATCATAACCAGACAACCACTCTTTCCTGGCAAAGATTATGTTCATCAGCTGAGACTTATCACAGAGgtattattagcttgatttcaaactcctgaattagctagcataattatattaagactgattatgttcttgtttgtttgtatttcttttctctcttttagaaMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|164072798|gb|ES113571.1|ES113571EST: CTCATCACTGAG CTTATAGGATCTCCTGATGACTCAAGCTTGGGATTCTTAAGAAGTGACAAT
genomic: CTCATCACTGAGgtaatctagt ... tggaaagcagCTTATAGGATCTCCTGATGACTCAAGCTTGGGATTCTTAAGAAGTGACAAT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TGATATTTGGTCTGTCGGTTGTATACTCGGTGAAACAATGACACGAGAGCCCTTGTTTCCCGGTAAAGATTATGTTCATCAGCTTAGACTCATCACTGAGgtaatctagtttagtatgtttcatccaaagaatcaccacttagtctctcttcacggtattaatgaatctttggaaagcag
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