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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGAATGGCCAATTTACTCGGATGTTGCTGCGAAGGTGACGAGAGGTTACTTGTAGCAGAGTTTATGCCTAATGAAACACTAGCCAAACACCTTTTTCACTgtgagaatcatttttcctatatatagcctttcatttaataatcttgccatgctagtcttggaagttatggtgtctaagtgtactttttatgctactag

Basic information

species Arabidopsis thaliana
transcript AT4G00710.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G00710.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: LOC_Os04g58750.2 (Oryza sativa), 5'ss of exon 4
AGAATGGCCAATTTACTCGGATGTTGCTGCGAAGGTGACGAGAGGTTACTTGTAGCAGAGTTTATGCCTAATGAAACACTAGCCAAACACCTTTTTCACTgtgagaatcatttttcctatatatagcctttcatttaataatcttgccatgctagtcttggaagttatggtgtctaagtgtactttttatgctactag-------
|   |   |||||| || || ||||||||||||||||||||||| || ||||| ||||| |  ||||| ||||| |||||||| || || ||||| || ||||||   |  |     | | | | || |  |  |||  | | ||    ||||    |   |     | ||  ||  ||   || || ||| |   |        
AAGGTTAGCAATTTGCTTGGCTGTTGCTGCGAAGGTGACGAGAGATTGCTTGTTGCAGAATACATGCCCAATGACACACTAGCGAAGCATCTTTTCCATTgtgagttgccatgcatttct-tgtcgcatgcc--ttagaacttttatgttgctgtcatcacatcaattagtaactgggtt--ctgttcatggttacatttccgca

upper sequence: AT4G00710.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GRMZM2G055561_T01 (Zea mays), 5'ss of exon 5
AGAATGGCCAATTTACTCGGATGTTGCTGCGAAGGTGACGAGAGGTTACTTGTAGCAGAGTTTATGCCTAATGAAACACTAGCCAAACACCTTTTTCACTgtgagaatcatttttcctatatatagcctttcatttaataatcttgccatgctagtcttggaagttatggtgtctaagtgtactttttatgctactag------------------------
                        |||||||||||||| || ||||| ||||| ||||| |  ||||| ||||| || || || ||||| ||||| |||||||||     |  ||   | | ||    | | | |||    |      |    | | | ||     ||  |   || | ||||  |  |  |  |||                         
------------------------TGCTGCGAAGGTGATGAAAGGTTGCTTGTTGCAGAATACATGCCCAATGATACGCTCGCGAAACATCTTTTCCACTGTGAG-----TCCTTTGAAAACATTCTATgttagttatgtttagcattacaaaattgtcggggaccataat---taggggtaccctcaagacgcctaattctcagctggtaacccccatcag

upper sequence: AT4G00710.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA07G07850.2 (Glycine max), 5'ss of exon 4
AGAATGGCCAATTTACTCGGATGTTGCTGCGAAGGTGACGAGAGGTTACTTGTAGCAGAGTTTATGCCTAATGAAACACTAGCCAAACACCTTTTTCACTgtgagaatcatttttcc----tatatatagcctttcatttaataatcttgccat-gctagtcttggaagttatggtgtctaagtgtactt-tttatgctactag
||  |||| ||||| || || |||||||| ||||| || |||||||| ||||| ||||| | |||||| ||||||||||| || || ||||||||||| ||| |||     ||||      | | | ||  | || |  |  | | | |   ||  |||    |  || ||||||| |     | |  |  ||| ||||     
AGGTTGGCAAATTTGCTTGGTTGTTGCTGTGAAGGAGAGGAGAGGTTGCTTGTGGCAGAATATATGCCCAATGAAACACTTGCAAAGCACCTTTTTCATTgtaagagctccttttatgcattttttttattcctttaagtgctgaacatctgatcactatgtcttaaatttatggtttacggttttgttgatttttgctt----

upper sequence: AT4G00710.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA03G01300.2 (Glycine max), 5'ss of exon 4
AGAATGGCCAATTTACTCGGATGTTGCTGCGAAGGTGACGAGAGGTTACTTGTAGCAGAGTTTATGCCTAATGAAACACTAGCCAAACACCTTTTTCACTgtgagaa--tcatttttcctatatatagcctttcatttaataatcttgccat--gctagtcttggaagttatggtgtctaagtgtactttttatgctactag
||  |||| ||||| || || |||||||| ||||| || |||||||| ||||| ||||| | |||||| ||||||||||| || || ||||||||||| ||| |||    | ||| | |  | | ||  | || |  |  | | | |   ||  |   |||||  |  | ||  | | || || |||  ||| || | |   
AGGTTGGCAAATTTGCTTGGTTGTTGCTGTGAAGGGGAGGAGAGGTTGCTTGTGGCAGAATATATGCCCAATGAAACACTTGCAAAGCACCTTTTTCATTgtaagagctccttttatgcattttttaatcctttaagtgttgaacatctgattggtatgtcttaaatttaataatatgta-gtttacggttt-tgttgcctt