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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTAGTGGTTCTGCTACGCAAGGTGAAATCTCCTTTATATCGTGGAATAGAAAAGTTCAACAGATATTAGCTTCTACCTCATACAATGGGACTACTGgtgagacttaggggtttctctctctttctctatctacttgactactacttcacttctgtctactatatttctgcttctgctcatcagtctttattttcattttcttttcccccag

Basic information

species Arabidopsis thaliana
transcript AT3G63460.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G63460.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA09G36050.2 (Glycine max), 5'ss of exon 4
GGTAGTGGTTCTGCTACGCAAGGTGAAATCTCCTTTATATCGTGGAATAGAAAAGTTCAACAGATATTAGCTTCTACCTCATACAATGGGACTACTGgtgagacttaggggtttctctctctttctctatctacttgactactacttcacttctgtctactatatttctgcttctgctcatcagtctttattttcattttcttttcccccag
 ||| ||| |||||| | || || ||||| || ||  |||| ||||| || ||||| ||||| |||||||| ||||| |||||||||||||| || ||||||    | ||  ||   ||| |  || ||| | ||   || | |  | || |  || |  |  | | ||   | || | ||   |   ||||||  |||| ||||||     
AGTACTGGGTCTGCTTCCCAGGGAGAAATTTCATTCTTATCTTGGAACAGTAAAGTCCAACACATATTAGCGTCTACTTCATACAATGGGACCACAGgtgagg---aaggaatttaatctatc-ctttatattctgttct-caatgttacat--gtttggtggaatactatatatgttaat--atacatattttggttttattttccag---

upper sequence: AT3G63460.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: Vv13s0158g00140.t01 (Vitis vinifera), 5'ss of exon 4
GGTAGTGGTTCTGCTACGCAAGGTGAAATCTCCTTTATATCGTGGAATAGAAAAGTTCAACAGATATTAGCTTCTACCTCATACAATGGGACTACTGgtgagacttaggggtttctctctctttctctatctacttgactactacttcacttctgtctactatatttctgcttctgctcatcagtctttattttcattttcttttcccccag
|||||||| |||||||  ||||||||||| || ||  |||| |||||||| || || ||||| |||||||| || || ||||||||||| || |||||||||    | || |          ||| | |  || ||     | | || | || ||| |      |||       |||  ||   ||| | ||||||                
GGTAGTGGATCTGCTAATCAAGGTGAAATTTCTTTCTTATCTTGGAATAGCAAGGTCCAACATATATTAGCATCCACTTCATACAATGGAACAACTGgtgagg---aaggata------atattcacaacttatttattatccaatttatttttgtttg----gttttaaacattgcaaattt-tctattttttcag---------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116440744|gb|EG483336.1|EG483336
EST:     TAGAAAAGTTCAACAGATATTAGCTTCTACCTCATACAATGGGACTACTG                         TAATTTGGGACTTGAGGAAGCAGAAGCCTATAATTAA
genomic: TAGAAAAGTTCAACAGATATTAGCTTCTACCTCATACAATGGGACTACTGgtgagactta ... tttcccccagTAATTTGGGACTTGAGGAAGCAGAAGCCTATAATTAA