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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCCTTGCAACCAGTTTCTGTCCCAAGAGCCTGGCACCAGCGAAGAGGCTCATCAATTTGCTTGTACTCGCTTTAAGGCTGAATACCCTGTTTTCCAAAAGgtacctcaacaaacaagacacttttcttcttcatatgcctttaataggtagctgattttgtaagtttataactaagcatgaatgatcatgatcatctatgtgtgtgtgtag

Basic information

species Arabidopsis thaliana
transcript AT3G63080.1
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125282024|gb|EL296109.1|EL296109
EST:     TGTACTCGCTTTAAGGCTGAATACCCTGTTTTCCAAAAG                         GTGCGTGTAAATGGACAAAACGCTGCACCAGTCTACAAATTCCTCAAATCT
genomic: TGTACTCGCTTTAAGGCTGAATACCCTGTTTTCCAAAAGgtacctcaac ... gtgtgtgtagGTGCGTGTAAATGGACAAAACGCTGCACCAGTCTACAAATTCCTCAAATCT
EST: gi|124846612|gb|EH931049.1|EH931049
EST:     TCAATTTGCTTGTACTCGCTTTAAGGCTAGAATACCCTGTTTTCCAAAAG                         GTGCGTGTAAATGG
genomic: TCAATTTGCTTGTACTCGCTTTAAGGCT-GAATACCCTGTTTTCCAAAAGgtacctcaac ... gtgtgtgtagGTGCGTGTAAATGG
EST: gi|19742267|gb|AU227620.1|AU227620
EST:     ATCAATTTGCTTGTACTCGCTTTAAGGCTGAATACCCTGTTTTCCAAAAG                         GTGCGTGTAAATGGACAAAACGCTGCACCAGTCTACAAATTCCTCAAATCT
genomic: ATCAATTTGCTTGTACTCGCTTTAAGGCTGAATACCCTGTTTTCCAAAAGgtacctcaac ... gtgtgtgtagGTGCGTGTAAATGGACAAAACGCTGCACCAGTCTACAAATTCCTCAAATCT
EST: gi|86027925|gb|DR323678.1|DR323678
EST:     ATCAATTTGCTTGTACTCGCTTTAAGGCTGAATACCCTGTTTTCCAAAAG                         GTGCGTGTAAATGGACAAAACGCTGCACCAGTCTACAAATTCCTCAAATCT
genomic: ATCAATTTGCTTGTACTCGCTTTAAGGCTGAATACCCTGTTTTCCAAAAGgtacctcaac ... gtgtgtgtagGTGCGTGTAAATGGACAAAACGCTGCACCAGTCTACAAATTCCTCAAATCT
EST: gi|19875832|gb|AU236663.1|AU236663
EST:     ATCAATTTGCTTGTACTCGCTTTAAGGCTGAATACCCTGTTTTCCAAAAG                         GTGCGTGTAAATGGACAAAACGCTGCACCAGTCTACAAATTCCTCAAATCT
genomic: ATCAATTTGCTTGTACTCGCTTTAAGGCTGAATACCCTGTTTTCCAAAAGgtacctcaac ... gtgtgtgtagGTGCGTGTAAATGGACAAAACGCTGCACCAGTCTACAAATTCCTCAAATCT
EST: gi|164004497|gb|ES056038.1|ES056038
EST:     TACCCTGTTTTCCAAAAG                         GTGCGTGTAAATGGACAAAACGCTGCACCAGTCTACAAATTCC
genomic: TACCCTGTTTTCCAAAAGgtacctcaac ... gtgtgtgtagGTGCGTGTAAATGGACAAAACGCTGCACCAGTCTACAAATTCC
EST: gi|125321476|gb|EL335561.1|EL335561
EST:     ATCAATTTGCTTGTACTCGCTTTAAGGCTGAATACCCTGTTTTCCAAAAG                         GTGCGTGTAAATGGACAAAACGCT
genomic: ATCAATTTGCTTGTACTCGCTTTAAGGCTGAATACCCTGTTTTCCAAAAGgtacctcaac ... gtgtgtgtagGTGCGTGTAAATGGACAAAACGCT