Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATTTGATAGAAAGATGTCTTCAGTTGTACATGAACAGAGATGAGGTCGTGAAGACTCTCTTGACTCGTGCAAGGATAGACCCTGGATTTACAACCTTGGgtaagcttttgaaggttattaaattctctttgcttcattttgtttcattgcatcatagcctttctttcagtcttagattttaagaattctcattagcata...

Basic information

species Arabidopsis thaliana
transcript AT3G61700.2
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G61700.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: Vv15s0046g00990.t01 (Vitis vinifera), 5'ss of exon 4
AATTTGATAGAAAGATGTCTTCAGTTGTACATGAACAGAGATGAGGTCGTGAAGACTCTCTTGACTCGTGCAAGGATAGACCCTGGATTTACAACCTTGGgtaagcttttgaaggttattaaattctctttgcttcattttgtttcattgcatcatagcctttctttcagtcttagattttaagaattctcattagcata
|||||||||||| | || || ||||||||||||||||| ||||| || |||||||| ||||||| ||||||||||||||| |||||||||||||| ||||||| || || | |||   ||  ||    |         ||    ||     ||  || | | |   |  ||     ||| |    |||    |||     
AATTTGATAGAACGGTGCCTACAGTTGTACATGAACAGGGATGAAGTGGTGAAGACCCTCTTGAGTCGTGCAAGGATAGATCCTGGATTTACAACTTTGGgtaggcattggcaggcctttccataaagtccaaaatcattaacatccacatattttatcatcttaattggttaactattatgtccatttcttttaaatct