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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTTTAGTCTACCATGATCTTCTGGGAATGATGCAGCATCCACATCACGCTAAGgtaaaatcctggaccattcatatatcatcatgcttcttcctgtatttatgattcattatctgatagtttccgctgtgttgcatccctatattttttcatttcag

Basic information

species Arabidopsis thaliana
transcript AT3G61530.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G61530.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: Vv15s0046g02170.t01 (Vitis vinifera), 5'ss of exon 4
GTTTTAGTCTACCATGATCTTCTGGGAATGATGCAGCATCCACATCACGCTAAGgtaaaatcctggaccattcatatatcatcatgcttcttcctgtatttatgattcattatctgatagtttccgctgtgttgcatccctatatttttt-catttcag
||  |||| ||||||||||| |||||||||||||| || |||||||| |||||||| || | |   |    |  |  |  | |||   |  ||   |||  ||  |||  |     ||| ||  |        | ||  ||  |  || | ||      
GTGCTAGTTTACCATGATCTGCTGGGAATGATGCAACACCCACATCATGCTAAGgttaattacacaattgcttttcaa--accataaattatcg-atatcgattcttc--tggggaatatttaacctgaaaaggtattgcttcaccttctgcag-----
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86079956|gb|DR375713.1|DR375713
EST:     TAGTCTACCATGATCTTCTGGGAATGATGCAGCATCCACATCACGCTAAG                         GTTACTCCAAAGTTTTGCAAACAGTACGCTCAAGTAGGAGAAGTGATCAAC
genomic: TAGTCTACCATGATCTTCTGGGAATGATGCAGCATCCACATCACGCTAAGgtaaaatcct ... ttcatttcagGTTACTCCAAAGTTTTGCAAACAGTACGCTCAAGTAGGAGAAGTGATCAAC