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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAGTCATCAGCTTCATTGTTTTCTCAGCTTCTTAACTCTCTTTTTAGAGCACCTATGTCATTTTATGACTCCACACCTCTTGGACGGATTCTTAGCAGGgtaaatgctaatgaacttgatgaatatttatgtttacattctggtattcaacttctttaactgtaattactttggatttgcag

Basic information

species Arabidopsis thaliana
transcript AT3G59140.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G59140.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA10G37150.1 (Glycine max), 5'ss of exon 5
GAAGTCATCAGCTTCATTGTTTTCTCAGCTTCTTAACTCTCTTTTTAGAGCACCTATGTCATTTTATGACTCCACACCTCTTGGACGGATTCTTAGCAGGgtaa--atgctaatgaacttgatgaatatttatgtt----tacattctggtattcaacttctttaactgtaattactttggatttgcag
    ||||||   || || ||||  || || || ||||| || ||| | |||||||||||||||||||||||||| ||| | ||| |||| ||||| |||||||  ||   ||  |  ||  |   | |||   ||    |  | |    |    || ||  |    || | ||  | | | | | |||
TCGATCATCAAAATCTTTATTTTTACAACTACTAAACTCCCTATTTCGTGCACCTATGTCATTTTATGACTCCACTCCTTTGGGAAGGATACTTAGTAGGgtaagcatatcaaatagtttagtttctttttcctttgcagtgaaatgcaatgaaaaatttaatattttgaattttatctcgttgttcag

upper sequence: AT3G59140.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA20G30490.1 (Glycine max), 5'ss of exon 6
GAAGTCATCAGCTTCATTGTTTTCTCAGCTTCTTAACTCTCTTTTTAGAGCACCTATGTCATTTTATGACTCCACACCTCTTGGACGGATTCTTAGCAGGgtaa--atgctaatgaacttgatgaatatttatgttta-cattctggtattcaacttctttaactgtaattactttggatttgcag-----
  | ||||||   || || ||||| ||||| || ||||| |||||| | || || |||||||||||||||||||| ||| | ||| |||| ||||| |||||||  ||  |||  |  ||  |   |   | ||   |  | |  | ||  ||    | || | |||  | ||| |   ||    |     
TCAATCATCAAAGTCTTTATTTTCACAGCTACTGAACTCCCTTTTTCGTGCCCCCATGTCATTTTATGACTCCACTCCTTTAGGAAGGATACTTAGTAGGgtaagcatattaaacagttttttctctccctttgcagagtaatgcgataaacagaaacattta-tgttttgactgttatttccttgttcag

upper sequence: AT3G59140.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA10G37160.1 (Glycine max), 5'ss of exon 4
GAAGTCATCAGCTTCATTGTTTTCTCAGCTTCTTAACTCTCTTTTTAGAGCACCTATGTCATTTTATGACTCCACACCTCTTGGACGGATTCTTAGCAGGgtaa--atgctaatgaacttgatgaatatttatgtt-tacattctggt--attcaacttctttaactgtaattactttggatttg--cag
  | ||||||   || |||||||| ||| | || ||||| |||||| | || || |||||||||||||||||||| ||| | ||| |||| ||||| |||||||  ||  |||  |  ||  |   |     |    | || |  | |  ||  ||    ||   || | | |  | |    |||  |||
TCAATCATCAAAGTCTTTGTTTTCACAGTTACTGAACTCCCTTTTTCGTGCCCCCATGTCATTTTATGACTCCACTCCTTTAGGAAGGATACTTAGTAGGgtaagcatattaaacagttttttctttccccttacagtgcaatgcgatgaatggaagcctttatgctttgactgttatttccttgttcag