Sequence
atgc intronic sequence ATGC exonic sequenceAGGTACTGAAATCTGGAGAATCGAAAATTTTGAGCCAGTCCCAGTACCAAAGTCTGAACATGGAAAGTTCTATATGGGAGATACCTACATTGTCTTGCAGgttttgatttttttcactcttcttctcccctttttatagactcttatcaagaatagataataagatattagcttacagaacaggacaacatgctttcttgtctgatcatatgtataaaatatatgctcctttattatctttcacatttatcatgattagctttcatatgtgcag
Basic information
species | Arabidopsis thaliana |
transcript | AT3G57410.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT3G57410.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: EFJ08608 (Selaginella moellendorffii), 5'ss of exon 2
AGGTACTGAAATCTGGAGAATCGAAAATTTTGAGCCAGTCCCAGTACCAAAGTCTGAACATGGAAAGTTCTATATGGGAGATACCTACATTGTCTTGCAGgttttgatttttttcactcttctt-ctcccctttttatagactcttatcaagaatagataataagatattagcttacagaacaggacaacatgctttcttgtctgatcatatgtataaaatatatgctcctttattatctttcacatttatcatgattagctttcatatgtgcag
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CGGGCTGGAGATTTGGAGAATCGAAAATTTTGTTCCTGTCCCTCTGCCAAAGTCTGATCATGGAAAGTTTTACACTGGTGATTCATATATCATCTTAAAGgtcgg-----tgctaacttttcttgcactttctttcatggatgatta------atttctactttcttactt-ctcccag------------------------------------------------------------------------------------------------
upper sequence: AT3G57410.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: EFJ19773 (Selaginella moellendorffii), 5'ss of exon 2
AGGTACTGAAATCTGGAGAATCGAAAATTTTGAGCCAGTCCCAGTACCAAAGTCTGAACATGGAAAGTTCTATATGGGAGATACCTACATTGTCTTGCAGgttttgatttttttcactcttctt-ctcccctttttatagactcttatcaagaatagataataagatattagcttacagaacaggacaacatgctttcttgtctgatcatatgtataaaatatatgctcctttattatctttcacatttatcatgattagctttcatatgtgcag
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CGGGCTGGAGATTTGGAGAATCGAAAATTTTGTTCCTGTCCCTCTGCCAAAGTCTGATCATGGAAAGTTTTACACTGGTGATTCATATATCATCTTAAAAgtcgg-----tgctaacttttcttgcacttcctttcatggatgatta------atttctactttcttactt-ctcccag------------------------------------------------------------------------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|116482622|gb|EG525214.1|EG525214EST: AGTCTGAACATGGAAAGTTCTATATGGGAGATACCTACATTGTCTTGCAG ACCACACAGAATAAGGGTGGCGCTTATCTATTTGATATACA-TTTTGGATT
genomic: AGTCTGAACATGGAAAGTTCTATATGGGAGATACCTACATTGTCTTGCAGgttttgattt ... atatgtgcagACCACACAGAATAAGGGTGGCGCTTATCTATTTGATATACATTTTTGGATT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AGGTACTGAAATCTGGAGAATCGAAAATTTTGAGCCAGTCCCAGTACCAAAGTCTGAACATGGAAAGTTCTATATGGGAGATACCTACATTGTCTTGCAGgttttgatttttttcactcttcttctcccctttttatagactcttatcaagaatagataataagatattagcttacagaacaggacaacatgctttcttgtctgatcatatgtataaaatatatgctcctttattatctttcacatttatcatgattagctttcatatgtgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT