Sequence
atgc intronic sequence ATGC exonic sequenceAGATGTTCTATCGGATATTCTCATAGTTTACTGCTTCATTACTGTTTGGTTTGTTGGAGGACTCACAATATTTCATTCCTATCTCATCTGTACTAACCAGgtgattagaaagatatatgctttcgtacatttcaggtctttctttttctgttcgctctgttttgttttaatggtgaaaatctgttttgtgcag
Basic information
species | Arabidopsis thaliana |
transcript | AT3G56930.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT3G56930.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GRMZM2G005834_T01 (Zea mays), 5'ss of exon 4
AGATGTTCTATCGGATATTCTCATAGTTTACTGCTTCATTACTGTTTGGTTTGTTGGAGGACTCACAATATTTCATTCCTATCTCATCTGTACTAACCAGgtgattagaaagatatatgcttt-cgtacatttcaggtctttctttttctgt---tcgctctgttttgttttaatggtgaaaatctgttttgtgcag---
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GGAAGCGTGCTCGTTTGCGCTAATCATATATACTTCCATTGTTGTTTGGTTTGTCGGAGGCCTCACAGTGTTTCATCTCTATCTAATCGGTACTAATCAGgtgactgtactaccttttgttgaatgtagtctttagaatttactgctacaatcgatggtcctattataccagaaatccagcaatgcacttgacaggacta
upper sequence: AT3G56930.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA03G27410.1 (Glycine max), 5'ss of exon 4
AGATGTTCTATCGGATATTCTCATAGTTTACTGCTTCATTACTGTTTGGTTTGTTGGAGGACTCACAATATTTCATTCCTATCTCATCTGTACTAACCAGgtga-----ttagaaagatatatgctttcgtacatttcag-gtctttctttttctgttcgctctgttttgttttaatggtgaaaatctgttttgtgcag--
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TGATTATGTATCAGATTTTCTGATAGTATACTGCTTCATAGCTGTCTGGTTTGTTGGTGGCCTCACAGCTTTCCATTTCTATCTCATTTGTACAAATCAGgtgactgttttacttcaaaaaatgtaaaaaagttcttaatcgtttttgattctttatttattatgcttt-tgtcatttttctttctttgcttcatcctgttMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|124997401|gb|EL069670.1|EL069670EST: TTCCTATCTCATCTGTACTAACCAG ACGACTTATGAGAATTTCCGATACCGTTATGATAAGAAGGAGAATCCATAC
genomic: TTCCTATCTCATCTGTACTAACCAGgtgattagaa ... ttttgtgcagACGACTTATGAGAATTTCCGATACCGTTATGATAAGAAGGAGAATCCATAC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AGATGTTCTATCGGATATTCTCATAGTTTACTGCTTCATTACTGTTTGGTTTGTTGGAGGACTCACAATATTTCATTCCTATCTCATCTGTACTAACCAGgtgattagaaagatatatgctttcgtacatttcaggtctttctttttctgttcgctctgttttgttttaatggtgaaaatctgttttgtgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA