1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
TTAGCTACTGGTGTTTTCTTTTTTAAAAGTAAGGCTGGGAAATCTGTGAATCCCTGGCGTACAGGTCTTAGTGGACAACTTCAGAAAGTGTTCATAACTGgtaattgcctttctactccctgatacaaaaatgtgaagtggcattgttggttctagaagatgagatttaatagtcgctccactttttttcttttcgatattaatgatgtatgatttgttactcag
species | Arabidopsis thaliana |
transcript | AT3G56050.2 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: TCCCTGGCGTACAGGTCTTAGTGGACAACTTCAGAAAGTGTTCATAACTG GTGTCCCCAAACTCAAAAGATCTGAGATTGAAGCTGEST: gi|124817284|gb|EH902150.1|EH902150
genomic: TCCCTGGCGTACAGGTCTTAGTGGACAACTTCAGAAAGTGTTCATAACTGgtaattgcct ... tgttactcagGTGTCCCCAAACTCAAAAGATCTGAGATTGAAGCTG
EST: GGTCTTAGTGGACAACTTCAGAAAGTGTTCATAACTG GTGTCCCCAAACTCAAAAGATCTGAGATTGAAGCCGCCTGTGAAGATTTTAEST: gi|86054312|gb|DR350069.1|DR350069
genomic: GGTCTTAGTGGACAACTTCAGAAAGTGTTCATAACTGgtaattgcct ... tgttactcagGTGTCCCCAAACTCAAAAGATCTGAGATTGAAGCTGCCTGTGAAGATTTTA
EST: TTCAGAAAGTGTTCATAACTG GTGTCCCCAAACTCAAAAGATCTGAGATTGAAGCTGCTTGTGAAGATTTTAEST: gi|86054311|gb|DR350068.1|DR350068
genomic: TTCAGAAAGTGTTCATAACTGgtaattgcct ... tgttactcagGTGTCCCCAAACTCAAAAGATCTGAGATTGAAGCTGCCTGTGAAGATTTTA
EST: TTCAGAAAGTGTTCATAACTG GTGTCCCCAAACTCAAAAGATCTGAGATTGAAGCTGCTTGTGAAGATTTTA
genomic: TTCAGAAAGTGTTCATAACTGgtaattgcct ... tgttactcagGTGTCCCCAAACTCAAAAGATCTGAGATTGAAGCTGCCTGTGAAGATTTTA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTAGCTACTGGTGTTTTCTTTTTTAAAAGTAAGGCTGGGAAATCTGTGAATCCCTGGCGTACAGGTCTTAGTGGACAACTTCAGAAAGTGTTCATAACTGgtaattgcctttctactccctgatacaaaaatgtgaagtggcattgttggttctagaagatgagatttaatagtcgctccactttttttcttttcgatattaatgatgtatgatttgttactcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA