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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAAGCTACCTCTCTCAAAGGCTCCGGTTGATGACCGAAATTTACCAGATATGCATCTTGGTCTTTATGATGATGTGGTTGTGTTTGATCATGTCGAAAAGgtgtcaaaaaatctcttgaactttttcataaaagaattggctactctatataactgaatgcgaattttgttttatgatctatag

Basic information

species Arabidopsis thaliana
transcript AT3G55870.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G55870.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: Vv13s0067g00400.t01 (Vitis vinifera), 5'ss of exon 4
AAAGCTACCTCTCTCAAAGGCTCCGGTTGATGACCGAAATTTACCAGATATGCATCTTGGTCTTTATGATGATGTGGTTGTGTTTGATCATGTCGAAAAGgtg-------tcaaaaaatctcttgaactttttcataaaagaattggctactctatataa-----ctgaatgcgaattttgttttatgatctatag----
|||||| ||  ||||||| || |  | ||||||| ||||| |  |||| || ||||| |  || |||||||||||| |||||||||||||||| ||||||||        |       ||        || |||    ||  | ||  ||   |  | ||     |    | | | |||   |   | ||  |       
AAAGCTGCCATTCTCAAAAGCACAAGATGATGACAGAAATCTCGCAGACATTCATCTAGCCCTATATGATGATGTGATTGTGTTTGATCATGTGGAAAAGgtactcttttttggttggtcatcaatgtttgttctcttaaacagtgtatatcattgaaaatcctcccttctaccactttccctgcttaattcaacacttg