1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
GTTACGCGACTTTAATAGCAACAATGGTTTTGAGCTCAATAGAAATGGAGATAGTGGACCACTCCTTCTCGATGTTCTTGAAGGGTTCTTGAAGTTTGAGgtatttctttctttttttcccctgaagatgtttgcagccaagtgtgaaacagaactttactatctataacttcttctcttagtttacaatctttacaacc...
species | Arabidopsis thaliana |
transcript | AT3G55000.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: ATAGTGGACCACTCCTTCTCGATGTTCTTGAAGGGTTCTTGAAGTTTGAG AGCATGACGCAGGGCATGGGTAGTAGTTCAAGGAGAGATTCAGAAACAGAGEST: gi|164072981|gb|ES039764.1|ES039764
genomic: ATAGTGGACCACTCCTTCTCGATGTTCTTGAAGGGTTCTTGAAGTTTGAGgtatttcttt ... ttttcttcagAGCATGACGCAGGGCATGGGTAGTAGTTCAAGGAGAGATTCAGAAACAGAG
EST: ATAGTGGACCACTCCTTCTCGATGTTCTTGAAGGGTTCTTGAAGTTTGAG AGCATGACGCAGGGCAT
genomic: ATAGTGGACCACTCCTTCTCGATGTTCTTGAAGGGTTCTTGAAGTTTGAGgtatttcttt ... ttttcttcagAGCATGACGCAGGGCAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTACGCGACTTTAATAGCAACAATGGTTTTGAGCTCAATAGAAATGGAGATAGTGGACCACTCCTTCTCGATGTTCTTGAAGGGTTCTTGAAGTTTGAGgtatttctttctttttttcccctgaagatgtttgcagccaagtgtgaaacagaactttactatctataacttcttctcttagtttacaatctttacaacc
- - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tctttctt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tttcccct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaaacaga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttcttctc