1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
GTGCAAAGATGTGGCAAGAGAACAGGGAAAAATGGGTGGGAGATCAATCTCGACAAAGAAAAAACACTGCAAAGGATCAGATTATAAGgtattatgtgtttcatcaacctttaagttcatctgacaatctttttgcagtgtcaaagaatcaaagaaggcaatgttttctaagatgttcttgaatctcttgcag
species | Arabidopsis thaliana |
transcript | AT3G54880.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: GAGATCAATCTCGACAAAGAAAAAACAACTGCAAAGGATCAGATTATAAG CTGGTCTACTACATAEST: gi|124735020|gb|EH826422.1|EH826422
genomic: GAGATCAATCTCGACAAAGAAAAAACA-CTGCAAAGGATCAGATTATAAGgtattatgtg ... tctcttgcagCTGGTCTACTACATA
EST: GGAGATCAATCTCGACAAAGAAAAAACACTGCAAAGGATCAGATTATAAG CTGGTCTACTACATA
genomic: GGAGATCAATCTCGACAAAGAAAAAACACTGCAAAGGATCAGATTATAAGgtattatgtg ... tctcttgcagCTGGTCTACTACATA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTGCAAAGATGTGGCAAGAGAACAGGGAAAAATGGGTGGGAGATCAATCTCGACAAAGAAAAAACACTGCAAAGGATCAGATTATAAGgtattatgtgtttcatcaacctttaagttcatctgacaatctttttgcagtgtcaaagaatcaaagaaggcaatgttttctaagatgttcttgaatctcttgcag
- - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG