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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCGGTGGAGGCGAGATTCCTGATGAAACCACCCTCGTCTGTGCTCGTGGTTCAGACAGgtttggaactcatattccctcttaagacatttcctctctacagttgttttcaaaattctttctgggaggttttagcttcttaaaagttgttgaataccgcatttcccattgatgtttaaagaaaaggaaaatactttggtatacggctttttgttgttgggtttattgtgcag

Basic information

species Arabidopsis thaliana
transcript AT3G54480.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G54480.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: Vv13s0139g00260.t01 (Vitis vinifera), 5'ss of exon 5
GTCGGTGGAGGCGAGATTCCTGATGAAACCACCCTCGTCTGTGCTCGTGGTTCAGACAGgtttggaactcatattccctcttaagacatttcctctctacagttgttttcaaaattctttctggga-ggttttagcttcttaaaagttgttgaataccgcatttcccattgatgtttaaagaaaaggaaaatactttggtatacggctttttgttgttgggtttattgtgcag
 | |||||||| ||| | || ||||| ||||||||| ||||| |||| |||||||||||||||| ||   | ||| |    |   || |||      |   | | || |   | | || | |   |   ||||    | || | | |     |  |   |||                                                                       
ATTGGTGGAGGTGAGCTGCCAGATGATACCACCCTCCTCTGTTCTCGGGGTTCAGACAGgtttgcaa---aaatttcaatatgttaccttttagagttggtgattttatgggagtcctctttacaataatttttttcttttgataataaacaaggatttcat-----------------------------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124792198|gb|EH881877.1|EH881877
EST:     GATGAAACCACCCTCGTCTGTGCTCGTGGTTCAGACAG                         TGCCCTGGAACTGTTATCAACCTGCAAGCTTAGCGAATTTAACAGTAAAAG
genomic: GATGAAACCACCCTCGTCTGTGCTCGTGGTTCAGACAGgtttggaact ... tattgtgcagTGCCCTGGAACTGTTATCAACCTGCAAGCTT-GCGAATTTAACAGTAAAAG
EST: gi|124816598|gb|EH901464.1|EH901464
EST:     CTCGTGGTTCAGACAG                         TGCCCTGGAACTGTTATCAACCTGCAAGCTTGCGAATTTAACAGTAAAAGC
genomic: CTCGTGGTTCAGACAGgtttggaact ... tattgtgcagTGCCCTGGAACTGTTATCAACCTGCAAGCTTGCGAATTTAACAGTAAAAGC
EST: gi|124885720|gb|EH964622.1|EH964622
EST:     CGAGATTCCTGATGAAACCACCCTCGTCTGTGCTCGTGGTTCAGACAG                         TGCCCTGGAACTGTTATCAACCTAAGCAAGCTTGCGAATTTAACAGTAAAA
genomic: CGAGATTCCTGATGAAACCACCCTCGTCTGTGCTCGTGGTTCAGACAGgtttggaact ... tattgtgcagTGCCCTGGAACTGTTATCAACCT--GCAAGCTTGCGAATTTAACAGTAAAA
EST: gi|86084807|gb|DR380566.1|DR380566
EST:     TCGTCTGTGCTCGTGGTTCAGACAG                         TGCCCTGGAACTGTTATCGACCTGCAAGCTTGCGAATTTAACAGTAAAAGC
genomic: TCGTCTGTGCTCGTGGTTCAGACAGgtttggaact ... tattgtgcagTGCCCTGGAACTGTTATCAACCTGCAAGCTTGCGAATTTAACAGTAAAAGC
EST: gi|19874582|gb|AU235413.1|AU235413
EST:     GGCGAGATTCCTGATGAAACCACCCTCGTCTGTGCTCGTGGTTCAGACAG                         TGCCCTGGAACTGTTATCAACCTGCAAGCTTGCGAATTTAACAGTAAAAGC
genomic: GGCGAGATTCCTGATGAAACCACCCTCGTCTGTGCTCGTGGTTCAGACAGgtttggaact ... tattgtgcagTGCCCTGGAACTGTTATCAACCTGCAAGCTTGCGAATTTAACAGTAAAAGC