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 5'  3'   		2  
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 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGCCAAGTCTATGAAGTTCAAAGATGGCTACATGGTGTCATCTGGTCAACCAACTAAGGAATACATAGACTCTGCAGTGAGACATGTTTTGCTTAGACAAgtgagtttcgtctgagttgttcttattagagttaagtaaaaaatcaacaacgtctaattaaagtgttgttaaaccgaatatgtag

Basic information

species Arabidopsis thaliana
transcript AT3G53870.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G53870.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA16G33230.1 (Glycine max), 5'ss of exon 5
AGCCAAGTCTATGAAGTTCAAAGATGGCTACATGGTGTCATCTGGTCAACCAACTAAGGAATACATAGACTCTGCAGTGAGACATGTTTTGCTTAGACAAgtgagtttc-gtctgagttgtt-cttattagagttaagtaaaaaatcaaca-------acgtctaattaaagtgttgtta--aaccgaatatgtag----------------------------------
|||||| || ||||| ||||| ||||| |||||| | || ||||| ||||||   ||||| ||||| ||||||||||||||||||||  | || ||||| ||  | |||  | |    | || | |  |||  ||   |     |  |  |        | | |   | |  |  | ||   |    || ||| |                                   
AGCCAAATCCATGAAATTCAAGGATGGGTACATGATCTCTTCTGGACAACCAGTCAAGGATTACATTGACTCTGCAGTGAGACATGTCCTCCTAAGACAGgtttgcttctatttctcatattacatgatagtttttctttcgccactaggattttcatgcatttggctcattttctatttttatttcaacatggaaagttggtgctaatcactattttcctgtcttacag

upper sequence: AT3G53870.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA16G33240.1 (Glycine max), 5'ss of exon 5
AGCCAAGTCTATGAAGTTCAAAGATGGCTACATGGTGTCATCTGGTCAACCAACTAAGGAATACATAGACTCTGCAGTGAGACATGTTTTGCTTAGACAAgtgag----tttcgtctgagttgttc-ttattagagttaagtaaaaaatcaacaa---cgtctaattaaagtgttgttaaaccgaatatgtag-------------------------------------------
||||||||| ||||| ||||| ||||| || ||| | || ||||| ||||||   ||||| ||||| ||||||||||||||||||||  | || ||||| ||  |    |||  |||   | |||   |  | || ||   |  |  |  |  |    | | |  ||      || |    |   ||   | |                                           
AGCCAAGTCCATGAAATTCAAGGATGGATATATGATTTCTTCTGGACAACCAGTCAAGGATTACATTGACTCTGCAGTGAGACATGTGCTACTAAGACAGgtttgattttttattcttcatagttaactgatggaatttcttttagcactaggattttcatgttgttggctcattttctttcttcatggattgatggtgctaaatgctaattgattccttactgtcttatatatag

upper sequence: AT3G53870.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA20G21190.1 (Glycine max), 5'ss of exon 5
AGCCAAGTCTATGAAGTTCAAAGATGGCTACATGGTGTCATCTGGTCAACCAACTAAGGAATACATAGACTCTGCAGTGAGACATGTTTTGCTTAGACAAgtgagtttcgtctgagttgttctta-----ttagagttaagtaaaaaatcaacaacgtctaattaaagtgttgttaaaccgaatatgtag-------------------------------
|||||| ||||||||||| || ||||| |||||| | || ||||| |||||    || || ||||| ||||||||||||||||||||  | || ||||| || | ||| |  |   || ||| ||     ||     ||  ||  |  |       ||  | | |   |||| |||    ||| |  |                                 
AGCCAAATCTATGAAGTTTAAGGATGGTTACATGATTTCTTCTGGGCAACCTGTCAAAGATTACATTGACTCTGCAGTGAGACATGTGCTCCTGAGACAGgtta-ttttgcttctattcttcatacattcttgatactatttatcatttttgggttgttgattcattttgtt-ttacgatgaagagatgatgctaattgttattttgttgctgcctcatag

upper sequence: AT3G53870.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA10G26790.1 (Glycine max), 5'ss of exon 5
AGCCAAGTCTATGAAGTTCAAAGATGGCTACATGGTGTCATCTGGTCAACCAACTAAGGAATACATAGACTCTGCAGTGAGACATGTTTTGCTTAGACAAgtgagtttcgtctgagttgttcttattagagttaagtaaaaaatcaacaacgtctaattaa-agtgttgtta--aaccgaatatgtag-------------------------
|||||| ||||||||||| || ||||| |||||| | || ||||| |||||    || || ||||| ||||||||||||||||||||  | || ||||| ||   ||| |  |    | |||||  |||| |   |  |  | | | |    |    ||     | ||  ||  ||  ||  |||                            
AGCCAAATCTATGAAGTTTAAGGATGGGTACATGATTTCTTCTGGGCAACCTGTCAAAGATTACATTGACTCTGCAGTGAGACATGTGCTCCTGAGACAGgt---ttttgctt---ctattctttgtagattcttgatactatttatctcttttgggttgttgattttactatgaagtgatgatgctaattgttattttttgctgcctcatag

upper sequence: AT3G53870.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA10G26890.1 (Glycine max), 5'ss of exon 5
AGCCAAGTCTATGAAGTTCAAAGATGGCTACATGGTGTCATCTGGTCAACCAACTAAGGAATACATAGACTCTGCAGTGAGACATGTTTTGCTTAGACAAgtgagtttcgtctgagttgttcttattagagttaagtaaaaaatcaacaacgtctaattaaagtgttgttaaaccgaatatgtag-----------------------------
|||||| ||||||||||| || ||||| |||||| | || ||||| |||||    || || ||||| ||||||||||||||||||||  | || ||||| ||   |||  | |    | |||||  |||| |   |  |  | | | |    |    ||   |  ||    |    || |||  |                             
AGCCAAATCTATGAAGTTTAAGGATGGGTACATGATTTCTTCTGGGCAACCTGTCAAAGATTACATTGACTCTGCAGTGAGACATGTGCTCCTGAGACAGgt---ttttttatcttctattctttgtagattcttgatactatttatctcttttgggttgttgattttactatgaaaagatgatgctaattggtattttgttgctgcctcatag

upper sequence: AT3G53870.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA09G28440.1 (Glycine max), 5'ss of exon 5
AGCCAAGTCTATGAAGTTCAAAGATGGCTACATGGTGTCATCTGGTCAACCAACTAAGGAATACATAGACTCTGCAGTGAGACATGTTTTGCTTAGACAAgtgagtttcgtctgagttgttcttattag--agttaagtaaaaaatcaacaacgtcta-attaaagtgttgttaaaccgaatatgtag-----------------------------------------------------
||||||||| ||||| ||||| ||||| |||||| | || ||||| |||||    ||||| ||||| ||||| ||||||||||||||  | || ||||| ||  ||||  | |   || ||||   |||  |  | | | |        || |      |||    |||||||    |   | | |                                                       
AGCCAAGTCCATGAAATTCAAGGATGGATACATGATTTCTTCTGGACAACCTGTCAAGGATTACATTGACTCAGCAGTGAGACATGTGCTACTAAGACAGgtttgttttttttttttttttctacatagccacctgattgattttctttcagcactaggattttcatgttgttggctcattttttttcttaatggattgatgttgctaaatgcaaaaagatttttcttcattgtcctatag

upper sequence: AT3G53870.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: PP1S29_222V6.1 (Physcomitrella patens), 5'ss of exon 5
AGCCAAGTCTATGAAGTTCAAAGATGGCTACATGGTGTCATCTGGTCAACCAACTAAGGAATACATAGACTCTGCAGTGAGACATGTTTTGCTTAGACAAgtg-----agtttcgtctgag----ttgttcttattagagttaagtaaaaaatcaacaacgtctaattaaagtgttg--ttaaaccgaata----tgtag-------------------------------------------------------------
 |||||||||||||| ||||| |||||||||||| | ||||| ||    ||    || || || || |||  ||| || ||||| ||| ||||  | || ||      || ||  | |||      | |  ||| |     |     | || | | |  ||  |  ||  |   |||  ||| ||  ||||    | ||                                                              
GGCCAAGTCTATGAAATTCAAGGATGGCTACATGATCTCATCCGGAAGCCCCGTCAATGATTATATTGACAGTGCCGTTAGACACGTTATGCTGCGTCAGgtattaacagatttttttgatacccctatgtttactcctccttgtgcagaattaatcttcgattgtttccatccttgcattatactaaatagttctataattgaggtttcattattccgttggctctactgagcctgaattgaagctattccttcttgcag

upper sequence: AT3G53870.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: PP1S454_3V6.1 (Physcomitrella patens), 5'ss of exon 5
AGCCAAGTCTATGAAGTTCAAAGATGGCTACATGGTGTCATCTGGTCAACCAACTAAGGAATACATAGACTCTGCAGTGAGACATGTTTTGCTTAGACAAgtgagtttcgtctgagttgttcttattagagttaagtaaaaaatcaacaacgtctaattaaagtgtt---gttaaaccgaat-atgtag----------------------------------------------------------------
 |||||||||||||||||||| || ||||||||| | ||||| ||    ||    || || ||||| |||  ||| || || || ||  || |  | || ||  ||| | | |   |||  | | |    ||||| | |    |        |    ||| | |  |    | |||  || | || |                                                                  
GGCCAAGTCTATGAAGTTCAAGGACGGCTACATGATTTCATCCGGAAGCCCTGTCAATGATTACATCGACAGTGCTGTTAGGCACGTCATGTTGCGTCAGgtatgttacatatcc-ttggccatttctctgttaactgagtttttctggctcttcccttatacttcttgtatcaaattgagttatctcagcatttcggtaatgctttcagtttgccgttgtgaaactgaatcgaagatattgctgtcttctag

upper sequence: AT3G53870.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: PP1S41_146V6.1 (Physcomitrella patens), 5'ss of exon 5
AGCCAAGTCTATGAAGTTCAAAGATGGCTACATGGTGTCATCTGGTCAACCAACTAAGGAATACATAGACTCTGCAGTGAGACATGTTTTGCTTAGACAAgtgagtttcg-------tctgagttgttcttattagagttaagtaaaaaat-----caacaacgtctaatt-------aaagtgttgtt---aaaccgaatatgtag-------------------------------
||||||||||||||||||||| |||||||||||| | ||||| ||    ||    || || ||||| ||   ||| || ||||| ||  || |  |||| ||  ||   |       || | | ||| ||   |   ||    |     ||     | ||    | |  ||       ||| | | |||   ||   |  | |   |                               
AGCCAAGTCTATGAAGTTCAAGGATGGCTACATGATTTCATCAGGAAGCCCCGTCAACGATTACATCGATAGTGCTGTCAGACACGTCATGTTACGACAGgtttgtcgagcagctattcagtggtgtcctctctgtggtctccttgctgatttctcctacggtctttgttttcaagaaaaaatctcgtttgcaagttgtctgtaatgtatcttagaaatgtttcgttatttttttcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125242596|gb|EL256681.1|EL256681
EST:     TGCAGTGAGACATGTTTTGCTTAGTACAA                         GGTGTGTTGGGAATCAAGGTGAAGGTTATGCTTGATTGGGACCCTAAGGG
genomic: TGCAGTGAGACATGTTTTGCTTAG-ACAAgtgagtttcg ... gaatatgtagGGTGTGTTGGGAATCAAGGTGAAGGTTATGCTTGATTGGGACCCTAAGGG
EST: gi|47831775|gb|CK121459.1|CK121459
EST:     CAACTAAGGAATACATAGACTCTGCAGTGAGACATGTTTTGCTTAGACAA                         GGTGTGTTGGGAATCAAGGTGAAGGTTATGCTTGATTGGGACCCTAAGGGC
genomic: CAACTAAGGAATACATAGACTCTGCAGTGAGACATGTTTTGCTTAGACAAgtgagtttcg ... gaatatgtagGGTGTGTTGGGAATCAAGGTGAAGGTTATGCTTGATTGGGACCCTAAGGGC
EST: gi|116450432|gb|EG493024.1|EG493024
EST:     CAACTAAGGAATACATAGACTCTGCAGTGAGACATGTTTTGCTTAGACAA                         GGTGTGTTGGGAATCAAGGTGAAGGTTATGCTTGATTGGGACCCTAAGGGC
genomic: CAACTAAGGAATACATAGACTCTGCAGTGAGACATGTTTTGCTTAGACAAgtgagtttcg ... gaatatgtagGGTGTGTTGGGAATCAAGGTGAAGGTTATGCTTGATTGGGACCCTAAGGGC
EST: gi|47829794|gb|CK119478.1|CK119478
EST:     CAACTAAGGAATACATAGACTCTGCAGTGAGACATGTTTTGCTTAGACAA                         GGTGTGTTGGGAATCAAGGTGAAGGTTATGCTTGATTGGGACCCTAAGGGC
genomic: CAACTAAGGAATACATAGACTCTGCAGTGAGACATGTTTTGCTTAGACAAgtgagtttcg ... gaatatgtagGGTGTGTTGGGAATCAAGGTGAAGGTTATGCTTGATTGGGACCCTAAGGGC
EST: gi|86081822|gb|DR377581.1|DR377581
EST:     CAACTAAGGAATACATAGACTCTGCAGTGAGACATGTTTTGCTTAGACAA                         GGTGTGTTGGGAATCAAGGTGAAGGTTATGCTTGATTGGGACCCTAAGGGC
genomic: CAACTAAGGAATACATAGACTCTGCAGTGAGACATGTTTTGCTTAGACAAgtgagtttcg ... gaatatgtagGGTGTGTTGGGAATCAAGGTGAAGGTTATGCTTGATTGGGACCCTAAGGGC
EST: gi|125134752|gb|EL175456.1|EL175456
EST:     CAACTAAGGAATACATAGACTCTGCAGTGAGACATGTTTTGCTTAGACAA                         GGTGTGTTGGGAATCAAGGTGAAGGTTA
genomic: CAACTAAGGAATACATAGACTCTGCAGTGAGACATGTTTTGCTTAGACAAgtgagtttcg ... gaatatgtagGGTGTGTTGGGAATCAAGGTGAAGGTTA
EST: gi|124816392|gb|EH901258.1|EH901258
EST:     GACTCTGCAGTGAGACATGTTTTGCTTAGACAA                         GGTGTGTTGGGAATCAAGGTGAAGGT
genomic: GACTCTGCAGTGAGACATGTTTTGCTTAGACAAgtgagtttcg ... gaatatgtagGGTGTGTTGGGAATCAAGGTGAAGGT
EST: gi|164184025|gb|ES086726.1|ES086726
EST:     CAACTAAGGAATACATAGACTCTGCAGTGAGACATGTTTTGCTTAGACAA                         GGTGTGTTGGGAATCAAGGTGAAGGTTATGCTTGATTGGGAC
genomic: CAACTAAGGAATACATAGACTCTGCAGTGAGACATGTTTTGCTTAGACAAgtgagtttcg ... gaatatgtagGGTGTGTTGGGAATCAAGGTGAAGGTTATGCTTGATTGGGAC
EST: gi|124790313|gb|EH879992.1|EH879992
EST:     CAACTAAGGAATACATAGACTCTGCAGTGAGACATGTTTTGCTTAGACAA                         GGTGTGTTGGGAATCAAGGTGAAAGGTTA
genomic: CAACTAAGGAATACATAGACTCTGCAGTGAGACATGTTTTGCTTAGACAAgtgagtttcg ... gaatatgtagGGTGTGTTGGGAATCAAGGTGAA-GGTTA
EST: gi|124947126|gb|EL022989.1|EL022989
EST:     CAACTAAGGAATACATAGACTCTGCAGTGAGACATGTTTTGCTTAGACAA                         GGTGTGTTGGGAATCAAGGTGAAGGTTATGCTTG
genomic: CAACTAAGGAATACATAGACTCTGCAGTGAGACATGTTTTGCTTAGACAAgtgagtttcg ... gaatatgtagGGTGTGTTGGGAATCAAGGTGAAGGTTATGCTTG
EST: gi|163969039|gb|ES011015.1|ES011015
EST:     CAACTAAGGAATACATAGACTCTGCAGTGAGACATGTTTTGCTTAGACAG                         GGTGTGTTGGGAATCAAG
genomic: CAACTAAGGAATACATAGACTCTGCAGTGAGACATGTTTTGCTTAGACAAgtgagtttcg ... gaatatgtagGGTGTGTTGGGAATCAAG
EST: gi|164205787|gb|ES050504.1|ES050504
EST:     AACTAAGGAATACATAGACTCTGTCAGTGAGACATGTTTTGCTTAGACAA                         GGTGTGTTGGGAATCAAGGTGAAGGTTATGCTTGATTGGGACCCTAAGGGC
genomic: AACTAAGGAATACATAGACTCTG-CAGTGAGACATGTTTTGCTTAGACAAgtgagtttcg ... gaatatgtagGGTGTGTTGGGAATCAAGGTGAAGGTTATGCTTGATTGGGACCCTAAGGGC
EST: gi|125325783|gb|EL339863.1|EL339863
EST:     TGAGACATGTTTTGCTTAGACAA                         GGTGTGTTGGGAATCAAGGTGAAGGTTATGCTTGATTGGGACCCTAAGGGC
genomic: TGAGACATGTTTTGCTTAGACAAgtgagtttcg ... gaatatgtagGGTGTGTTGGGAATCAAGGTGAAGGTTATGCTTGATTGGGACCCTAAGGGC
EST: gi|125224387|gb|EL238472.1|EL238472
EST:     TGCAGTGAGACATGTTTTGCTTAGACAA                         GGTGTGTTGGGAATCAAGGTGAAGGTTATGCTTGATTGGGACCCTAAGGGC
genomic: TGCAGTGAGACATGTTTTGCTTAGACAAgtgagtttcg ... gaatatgtagGGTGTGTTGGGAATCAAGGTGAAGGTTATGCTTGATTGGGACCCTAAGGGC
EST: gi|125028405|gb|EL100674.1|EL100674
EST:     CAACTAAGGAATACATAGACTCTGCAGTGAGACATGTTTTGCTTAGACAA                         GGTGTGTTGGGAATCAAGGTGAAGGTTATG
genomic: CAACTAAGGAATACATAGACTCTGCAGTGAGACATGTTTTGCTTAGACAAgtgagtttcg ... gaatatgtagGGTGTGTTGGGAATCAAGGTGAAGGTTATG
EST: gi|125276494|gb|EL290579.1|EL290579
EST:     CAACTAAGGAATACATAGACTCTGCAGTGAGACATGTTTTGCTTAGACAA                         GGTGTGTTGGGAATCAAGGTGAAGGTTATGCTTGATTGGGACCCTAAGGGC
genomic: CAACTAAGGAATACATAGACTCTGCAGTGAGACATGTTTTGCTTAGACAAgtgagtttcg ... gaatatgtagGGTGTGTTGGGAATCAAGGTGAAGGTTATGCTTGATTGGGACCCTAAGGGC
EST: gi|86087971|gb|DR383730.1|DR383730
EST:     CAACTAAGGAATACATAGACTCTGCAGTGAGACATGTTTTGCTTAGACAA                         GGTGTGTTGGGAATCAAGGTGAAGGTTATGCTTGATTGGGACCCTAAGGGC
genomic: CAACTAAGGAATACATAGACTCTGCAGTGAGACATGTTTTGCTTAGACAAgtgagtttcg ... gaatatgtagGGTGTGTTGGGAATCAAGGTGAAGGTTATGCTTGATTGGGACCCTAAGGGC
EST: gi|125233093|gb|EL247178.1|EL247178
EST:     CAACTAAGGAATACATAGACTCTGCAGTGAGACATGTTTTGCTTAGACAA                         GGTGTGTTGGGAATCAAGGTGAAGGT
genomic: CAACTAAGGAATACATAGACTCTGCAGTGAGACATGTTTTGCTTAGACAAgtgagtttcg ... gaatatgtagGGTGTGTTGGGAATCAAGGTGAAGGT
EST: gi|125005943|gb|EL078212.1|EL078212
EST:     CAACTAAGGAATACATAGACTCTGCAGTGAGACATGTTTTGCTTAGACAA                         GGGGTGTTGGGAATCAAGGTGAAGGTTA
genomic: CAACTAAGGAATACATAGACTCTGCAGTGAGACATGTTTTGCTTAGACAAgtgagtttcg ... gaatatgtagGGTGTGTTGGGAATCAAGGTGAAGGTTA
EST: gi|125157752|gb|EL186676.1|EL186676
EST:     ATAGACTCTGCAGTGAGACATGTTTTGTCTTAGACAA                         GGTGTGTTGGGAATCAAGGTGAAGGTTATGCTTGATTGGGACCCTAAGGG
genomic: ATAGACTCTGCAGTGAGACATGTTTTG-CTTAGACAAgtgagtttcg ... gaatatgtagGGTGTGTTGGGAATCAAGGTGAAGGTTATGCTTGATTGGGACCCTAAGGG
EST: gi|124886917|gb|EH965819.1|EH965819
EST:     CAACTAAGGAATACATAGACTCTGCAGTGAGACATGTTTTGCTTAGACAA                         GGTGTGTTGGGAATCAAGGTGAAGGTTA
genomic: CAACTAAGGAATACATAGACTCTGCAGTGAGACATGTTTTGCTTAGACAAgtgagtttcg ... gaatatgtagGGTGTGTTGGGAATCAAGGTGAAGGTTA
EST: gi|124756950|gb|EH847080.1|EH847080
EST:     CAACTAAGGAATACATAGACTCTGCAGTGAGACATGTTTTGCTTAGACAA                         GGTGTGTTGGGAATCAAG
genomic: CAACTAAGGAATACATAGACTCTGCAGTGAGACATGTTTTGCTTAGACAAgtgagtttcg ... gaatatgtagGGTGTGTTGGGAATCAAG
EST: gi|86075791|gb|DR371548.1|DR371548
EST:     CAACTAAGGAATACATAGACTCTGCAGTGAGACATGTTTTGCTTAGACAA                         GGTGTGTTGGGAATCAAGGTGAAGGTTATGCTTGATTGGGACCCTAAGGGC
genomic: CAACTAAGGAATACATAGACTCTGCAGTGAGACATGTTTTGCTTAGACAAgtgagtttcg ... gaatatgtagGGTGTGTTGGGAATCAAGGTGAAGGTTATGCTTGATTGGGACCCTAAGGGC
EST: gi|116445202|gb|EG487794.1|EG487794
EST:     CAACTAAGGAATACATAGACTCTGCAGTGAGACATGTTTTGCTTAGACAA                         GGTGTGTTGGGAATCAAGGTGAAGGTTATGCTTGATTGGGACCCTAAGGGC
genomic: CAACTAAGGAATACATAGACTCTGCAGTGAGACATGTTTTGCTTAGACAAgtgagtttcg ... gaatatgtagGGTGTGTTGGGAATCAAGGTGAAGGTTATGCTTGATTGGGACCCTAAGGGC
EST: gi|125195931|gb|EL210885.1|EL210885
EST:     TGAGACATGTTTTGCTTAGACAA                         GGTGTGTTGGGAATCAAGGTGAAGGTTATGCTTGATTGGGACCCTAAGGGC
genomic: TGAGACATGTTTTGCTTAGACAAgtgagtttcg ... gaatatgtagGGTGTGTTGGGAATCAAGGTGAAGGTTATGCTTGATTGGGACCCTAAGGGC
EST: gi|124857235|gb|EH941672.1|EH941672
EST:     AACTAAGGAATACATAGACTCTGCAGTGAGACATGTTTTGCTTAGACAA                         GGTGTGTTGGGAATCAAGGTGAAGGTTATGCTTGATTGGGACCCTAAGGGC
genomic: AACTAAGGAATACATAGACTCTGCAGTGAGACATGTTTTGCTTAGACAAgtgagtttcg ... gaatatgtagGGTGTGTTGGGAATCAAGGTGAAGGTTATGCTTGATTGGGACCCTAAGGGC
EST: gi|164043240|gb|ES147178.1|ES147178
EST:     CAACTAAGGAATACATAGACTCTGCAGTGAGACATGTTTTGCTTAGACAA                         GGTGTGTTGGGAATCAAGGTGAAGGTTATGCTTGATT
genomic: CAACTAAGGAATACATAGACTCTGCAGTGAGACATGTTTTGCTTAGACAAgtgagtttcg ... gaatatgtagGGTGTGTTGGGAATCAAGGTGAAGGTTATGCTTGATT
EST: gi|125253767|gb|EL267852.1|EL267852
EST:     AAACTAAGGAATACATAGACTCTGCAGTGAGACATGTTTTGCTTAGACAA                         GGTGTGTTGGGAATCAAGGTGAAGGTTATG
genomic: -AACTAAGGAATACATAGACTCTGCAGTGAGACATGTTTTGCTTAGACAAgtgagtttcg ... gaatatgtagGGTGTGTTGGGAATCAAGGTGAAGGTTATG
EST: gi|124961033|gb|EL035640.1|EL035640
EST:     GTTTTGCTTAGACAA                         GGTGTGTTGGGAATCAAGGTGAAGGTTATGCTTGATTGGGACCCTAAGGGC
genomic: GTTTTGCTTAGACAAgtgagtttcg ... gaatatgtagGGTGTGTTGGGAATCAAGGTGAAGGTTATGCTTGATTGGGACCCTAAGGGC
EST: gi|125256113|gb|EL270198.1|EL270198
EST:     CTAAGGAATACATAGACTCTGCAGTGAGACATGTTTTGCTTAGACAA                         GGTGTGTTGGGAATCAAGGTGAAGGTTATGCTTGATTGGGACCCTAAGGGC
genomic: CTAAGGAATACATAGACTCTGCAGTGAGACATGTTTTGCTTAGACAAgtgagtttcg ... gaatatgtagGGTGTGTTGGGAATCAAGGTGAAGGTTATGCTTGATTGGGACCCTAAGGGC
EST: gi|125246468|gb|EL260553.1|EL260553
EST:     AACTAAAGGAATACATAGACTCTGCAGTGAGACATGTTTTGCTTAGACAA                         GGTGTGTTGGGAATCAAGG
genomic: AACT-AAGGAATACATAGACTCTGCAGTGAGACATGTTTTGCTTAGACAAgtgagtttcg ... gaatatgtagGGTGTGTTGGGAATCAAGG
EST: gi|124778444|gb|EH868387.1|EH868387
EST:     CAACTAAGGAATACATAGACTCTGCAGTGAGACATGTTTTGCTTAGACAA                         GGTGTGTTGGGAATCAAGGTGAAGGTTATG
genomic: CAACTAAGGAATACATAGACTCTGCAGTGAGACATGTTTTGCTTAGACAAgtgagtttcg ... gaatatgtagGGTGTGTTGGGAATCAAGGTGAAGGTTATG
EST: gi|163987972|gb|EL990779.1|EL990779
EST:     CAACTAAGGAATACATAGACTCTGCAGTGAGACATGTTTTGCTTAGACAA                         GGTGTGTTGGGAATCAAGGTNAAGGTTATGCTTGATTGGG
genomic: CAACTAAGGAATACATAGACTCTGCAGTGAGACATGTTTTGCTTAGACAAgtgagtttcg ... gaatatgtagGGTGTGTTGGGAATCAAGGTGAAGGTTATGCTTGATTGGG
EST: gi|164132447|gb|EL986148.1|EL986148
EST:     CAACTAAGGAATACATAGACTCTGCAGTGAGACATGTTTTGCTTAGACAA                         GGTGTGTTGGGAATCAAGGTGAAGGTTATGCTTGATTGGG
genomic: CAACTAAGGAATACATAGACTCTGCAGTGAGACATGTTTTGCTTAGACAAgtgagtttcg ... gaatatgtagGGTGTGTTGGGAATCAAGGTGAAGGTTATGCTTGATTGGG
EST: gi|164085845|gb|ES167295.1|ES167295
EST:     CAACTAAGGAATACATAGACTCTGCAGTGAGACATGTTTTGCTTAGACAA                         GGTGTGTTGGGAA
genomic: CAACTAAGGAATACATAGACTCTGCAGTGAGACATGTTTTGCTTAGACAAgtgagtttcg ... gaatatgtagGGTGTGTTGGGAA
EST: gi|125135095|gb|EL175607.1|EL175607
EST:     GGAATACATAGACTCTGCAGTGAGACATGTTTTGCTTAGACAA                         GGTGTGTTGGGAATCAAGGTGAAGGTTATGCTTGATTGGGACCCTAAGGGC
genomic: GGAATACATAGACTCTGCAGTGAGACATGTTTTGCTTAGACAAgtgagtttcg ... gaatatgtagGGTGTGTTGGGAATCAAGGTGAAGGTTATGCTTGATTGGGACCCTAAGGGC
EST: gi|125190527|gb|EL205481.1|EL205481
EST:     TCTGCAGTGAGACATGTTTTGCTTAGACAA                         GGTGTGTTGGGAATCAAGGTGAAGGTTATGCTTGATTGGGACCCTAAGGGC
genomic: TCTGCAGTGAGACATGTTTTGCTTAGACAAgtgagtttcg ... gaatatgtagGGTGTGTTGGGAATCAAGGTGAAGGTTATGCTTGATTGGGACCCTAAGGGC
EST: gi|125050188|gb|EL122457.1|EL122457
EST:     CAACTAAGGAATACATAGACTCTGCAGTGAGACATGTTTTGCTTAGACAA                         GGTGTGTTGGGAATCAAGGTGAAGGTTAT
genomic: CAACTAAGGAATACATAGACTCTGCAGTGAGACATGTTTTGCTTAGACAAgtgagtttcg ... gaatatgtagGGTGTGTTGGGAATCAAGGTGAAGGTTAT
EST: gi|124890543|gb|EH969445.1|EH969445
EST:     ACATGTTTTGCTTAGACAA                         GGTGTGTTGGGAATCAAGGTGAAGGTTATGCTTGATTGGGACCCTAAGGGC
genomic: ACATGTTTTGCTTAGACAAgtgagtttcg ... gaatatgtagGGTGTGTTGGGAATCAAGGTGAAGGTTATGCTTGATTGGGACCCTAAGGGC
EST: gi|124706986|gb|EH798388.1|EH798388
EST:     TGCTTAGACAA                         GGTGTGTTGGGAATCAAGGTGAAGGTTATGCTTGATTGGGACCCTAAGGGC
genomic: TGCTTAGACAAgtgagtttcg ... gaatatgtagGGTGTGTTGGGAATCAAGGTGAAGGTTATGCTTGATTGGGACCCTAAGGGC
EST: gi|125041381|gb|EL113650.1|EL113650
EST:     ATAGACTCTGCAGTGAGACATGTTTTGCTTAGACAA                         GGTGTGTTGGGAATCAAGGTGAAGGTTATGCTTGATTGGGACCCTAAGGGC
genomic: ATAGACTCTGCAGTGAGACATGTTTTGCTTAGACAAgtgagtttcg ... gaatatgtagGGTGTGTTGGGAATCAAGGTGAAGGTTATGCTTGATTGGGACCCTAAGGGC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AGCCAAGTCTATGAAGTTCAAAGATGGCTACATGGTGTCATCTGGTCAACCAACTAAGGAATACATAGACTCTGCAGTGAGACATGTTTTGCTTAGACAAgtgagtttcgtctgagttgttcttattagagttaagtaaaaaatcaacaacgtctaattaaagtgttgttaaaccgaatatgtag

- - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CTGCAG