1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
GTTGCTAAGAGGAAGTTGGGAACCCACAAGAGAGCCAAGCGAAAGAGAGAGGAGATGTCCAGTGTTCTCCGCAAGATGAGgtaaactgaacaatcgaacaagcttattgttggctttgtttttctcaattcaaaaaccaattcttttatagtaattactgatttttgggactttgtttacttacacgcag
species | Arabidopsis thaliana |
transcript | AT3G53740.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: GTCCAGTGTTCTCCGCAAGATGAG GTCTGGCGGTGGTGGTGCAACTGAGAAGAAGAAGTGAACGTCATCTTAAGTEST: gi|164026355|gb|ES073498.1|ES073498
genomic: GTCCAGTGTTCTCCGCAAGATGAGgtaaactgaa ... ttacacgcagGTCTGGCGGTGGTGGTGCAACTGAGAAGAAGAAGTGAACGTCATCTTAAGT
EST: AGAGCCAAGCGAAAGAGAGAGGAGATGTCCAGTGTTCTCCGCAAGATGAG GTCTGGCGGTGGTGGTGCAACTGAGAEST: gi|125326573|gb|EL340653.1|EL340653
genomic: AGAGCCAAGCGAAAGAGAGAGGAGATGTCCAGTGTTCTCCGCAAGATGAGgtaaactgaa ... ttacacgcagGTCTGGCGGTGGTGGTGCAACTGAGA
EST: CAGTGTTCTCCGCAAGATGAG GTCTGGCGGTGGTGGTGCAACTGAGAAGAAGAAGTGAACGTCATCTTAAGTEST: gi|125152828|gb|EL184274.1|EL184274
genomic: CAGTGTTCTCCGCAAGATGAGgtaaactgaa ... ttacacgcagGTCTGGCGGTGGTGGTGCAACTGAGAAGAAGAAGTGAACGTCATCTTAAGT
EST: AGAGCCAAGCGAAAGAGAGAGGAGATGTCCAGTGTTCTCCGCAAGATGAG GTCTGGCGGTGGTGGTGCAACTGAGAAGAAGAAGTGAACGTCATEST: gi|164149954|gb|ES051516.1|ES051516
genomic: AGAGCCAAGCGAAAGAGAGAGGAGATGTCCAGTGTTCTCCGCAAGATGAGgtaaactgaa ... ttacacgcagGTCTGGCGGTGGTGGTGCAACTGAGAAGAAGAAGTGAACGTCAT
EST: AGAGCCAAGCGAAAGAGAGAGGAGATGTCCAGTGTTCTCCGAAAGATGAG GTCTGGCGGTGGTGGTGCAACTGAGAAGAAGAAGTGAACEST: gi|164046415|gb|ES182121.1|ES182121
genomic: AGAGCCAAGCGAAAGAGAGAGGAGATGTCCAGTGTTCTCCGCAAGATGAGgtaaactgaa ... ttacacgcagGTCTGGCGGTGGTGGTGCAACTGAGAAGAAGAAGTGAAC
EST: AGTGTTCTCCGCAAGATGAG GTCTGGCGGTGGTGGTGCAACTGAGAAGAAGAAGTGAACGTCATCTTAAGTEST: gi|164172984|gb|ES145411.1|ES145411
genomic: AGTGTTCTCCGCAAGATGAGgtaaactgaa ... ttacacgcagGTCTGGCGGTGGTGGTGCAACTGAGAAGAAGAAGTGAACGTCATCTTAAGT
EST: AGAGCCAAGCGAAAGAGAGAGGAGATGTCCAGTGTTCTCCGCAAGATGAG GTCTGGCGGTGGTGGTGCAACTGEST: gi|164196726|gb|ES038504.1|ES038504
genomic: AGAGCCAAGCGAAAGAGAGAGGAGATGTCCAGTGTTCTCCGCAAGATGAGgtaaactgaa ... ttacacgcagGTCTGGCGGTGGTGGTGCAACTG
EST: GTGTTCTCCGCAAGATGAG GTCTGGCGGTGGTGGTGCAACTGAGAAGAAGAAGTGAACGTCATCTTAAGTEST: gi|164052800|gb|EL981951.1|EL981951
genomic: GTGTTCTCCGCAAGATGAGgtaaactgaa ... ttacacgcagGTCTGGCGGTGGTGGTGCAACTGAGAAGAAGAAGTGAACGTCATCTTAAGT
EST: AGCGAAAGAGAGAGGAGATGTCCAGTGTTCTCCGCAAGATGAG GTCTGGTGGTGGTGGTGCAACTGAGAAGAAGAAGTGAACGTCATCTTAAGTEST: gi|164121556|gb|ES114762.1|ES114762
genomic: AGCGAAAGAGAGAGGAGATGTCCAGTGTTCTCCGCAAGATGAGgtaaactgaa ... ttacacgcagGTCTGGCGGTGGTGGTGCAACTGAGAAGAAGAAGTGAACGTCATCTTAAGT
EST: AGAGCCAAGCGAAAGAGAGAGGAGATGTCCAGTGTTCTCCGCAAGATGAG GTCTGGCGGTGGTGGTGCAACTEST: gi|124804617|gb|EH892314.1|EH892314
genomic: AGAGCCAAGCGAAAGAGAGAGGAGATGTCCAGTGTTCTCCGCAAGATGAGgtaaactgaa ... ttacacgcagGTCTGGCGGTGGTGGTGCAACT
EST: GGAGATGTCCAGTGTTCTCCGCAAGATTGAG GTCTGGCGGTGGTGGTGCAGCTGAGAAGAAGAAGTGAACGTCATCTTAAGEST: gi|164035054|gb|ES150050.1|ES150050
genomic: GGAGATGTCCAGTGTTCTCCGCAAGA-TGAGgtaaactgaa ... ttacacgcagGTCTGGCGGTGGTGGTGCAACTGAGAAGAAGAAGTGAACGTCATCTTAAG
EST: AGAGCCAAGCGAAAGAGAGAGGAGATGTCCAGTGTTCTCCGCAAGATGAG GTCTGGCGGTGGTGGTGCAACEST: gi|124819319|gb|EH904185.1|EH904185
genomic: AGAGCCAAGCGAAAGAGAGAGGAGATGTCCAGTGTTCTCCGCAAGATGAGgtaaactgaa ... ttacacgcagGTCTGGCGGTGGTGGTGCAAC
EST: AGAGCCAAGCGAAAGAGAGAGGAGATGTCCAGTGTTCTCCGCAAGATGAG GTCTGGACGGTGGTGGEST: gi|124982709|gb|EL055495.1|EL055495
genomic: AGAGCCAAGCGAAAGAGAGAGGAGATGTCCAGTGTTCTCCGCAAGATGAGgtaaactgaa ... ttacacgcagGTCTGG-CGGTGGTGG
EST: AGAGCCAAGCGAAAGAGAGAGGAGATGTCCAGTGTTCTCCGCAAGATGAG GTCTGGCGGTGGTGGTGCAACTGAGAAGAAGAAGEST: gi|125239550|gb|EL253635.1|EL253635
genomic: AGAGCCAAGCGAAAGAGAGAGGAGATGTCCAGTGTTCTCCGCAAGATGAGgtaaactgaa ... ttacacgcagGTCTGGCGGTGGTGGTGCAACTGAGAAGAAGAAG
EST: AGAGCCAAGCGAAAGAGAGAGGAGATGTCCAGTGTTCTCCGCAAGATGAG GTCTGGCGGTGGTGGTGCAACTGAGAAGAAGEST: gi|164039007|gb|ES135682.1|ES135682
genomic: AGAGCCAAGCGAAAGAGAGAGGAGATGTCCAGTGTTCTCCGCAAGATGAGgtaaactgaa ... ttacacgcagGTCTGGCGGTGGTGGTGCAACTGAGAAGAAG
EST: CGAAAGAGAGAGGAGATGTCCAGTGTTCTCCGCAAGATGAG GTCTGGCGGTGGTGGTGCAACTGAGAAGAAGAAGTGAACGTCATCTTAAGTEST: gi|124935464|gb|EL012447.1|EL012447
genomic: CGAAAGAGAGAGGAGATGTCCAGTGTTCTCCGCAAGATGAGgtaaactgaa ... ttacacgcagGTCTGGCGGTGGTGGTGCAACTGAGAAGAAGAAGTGAACGTCATCTTAAGT
EST: AGAGCCAAGCGAAAGAGAGAGGAGATGTCCAGTGTTCTCCGCAAGATGAG GTCTGGCGGTGGTGGTGCAACTGAGAAGAEST: gi|164213397|gb|ES018708.1|ES018708
genomic: AGAGCCAAGCGAAAGAGAGAGGAGATGTCCAGTGTTCTCCGCAAGATGAGgtaaactgaa ... ttacacgcagGTCTGGCGGTGGTGGTGCAACTGAGAAGA
EST: AGAGCCAAGCGAAAGAGAGAGGAGATGTCCAGTGTTCTCCGCAAGATGAG GTCTGGCGGTGGTGGTGCAACTGAGAAEST: gi|124887884|gb|EH966786.1|EH966786
genomic: AGAGCCAAGCGAAAGAGAGAGGAGATGTCCAGTGTTCTCCGCAAGATGAGgtaaactgaa ... ttacacgcagGTCTGGCGGTGGTGGTGCAACTGAGAA
EST: AGAGCCAAGCGAAAGAGAGAGGAGATGTCCAGTGTTCTCCGCAAGATGAG GTCTGGCGGTGGTGGTGCAACTGAGAAGAEST: gi|86053782|gb|DR349539.1|DR349539
genomic: AGAGCCAAGCGAAAGAGAGAGGAGATGTCCAGTGTTCTCCGCAAGATGAGgtaaactgaa ... ttacacgcagGTCTGGCGGTGGTGGTGCAACTGAGAAGA
EST: GAGCCAAGCGAAAGAGAGGAGGAGATGTCCAGTGTTCTCCGCAAGATGAG GTCTGGCGGTGGTGGTGCAACTGAGAAGAAGAAGTGAACGTCATCTTAAGTEST: gi|163996654|gb|ES055982.1|ES055982
genomic: GAGCCAAGCGAAAGAGAG-AGGAGATGTCCAGTGTTCTCCGCAAGATGAGgtaaactgaa ... ttacacgcagGTCTGGCGGTGGTGGTGCAACTGAGAAGAAGAAGTGAACGTCATCTTAAGT
EST: AGAGCCAAGCGAAAGAGAGAGGAGATGTCCAGTGTTCTCCGCAAGATGAG GTCTGGCGGTGGTGGTGCAACTEST: gi|86086302|gb|DR382061.1|DR382061
genomic: AGAGCCAAGCGAAAGAGAGAGGAGATGTCCAGTGTTCTCCGCAAGATGAGgtaaactgaa ... ttacacgcagGTCTGGCGGTGGTGGTGCAACT
EST: AGAGCCAAGCGAAAGAGAGAGGAGATGTCCAGTGTTCTCCGCAAGATGAG GTCTGGCGGTGGTGGTGCAACTGAGAAGAAGAAGTGAACGTCATCTTAAGTEST: gi|163979723|gb|ES038776.1|ES038776
genomic: AGAGCCAAGCGAAAGAGAGAGGAGATGTCCAGTGTTCTCCGCAAGATGAGgtaaactgaa ... ttacacgcagGTCTGGCGGTGGTGGTGCAACTGAGAAGAAGAAGTGAACGTCATCTTAAGT
EST: GAGCCAAGCGAAAAGAGAGAGGAGATGTCCAGTGTTCTCCGCAAGATGAG GTCTGGCGGTGGTGGTGCAACTGAGAAGAAGAAGTGAACGTEST: gi|164069900|gb|ES134388.1|ES134388
genomic: GAGCCAAGCG-AAAGAGAGAGGAGATGTCCAGTGTTCTCCGCAAGATGAGgtaaactgaa ... ttacacgcagGTCTGGCGGTGGTGGTGCAACTGAGAAGAAGAAGTGAACGT
EST: TCCGCAAGATGAG GTCTGGCGGTGGTGGTGCAACTGAGAAGAAGAAGTGAACGTCATCTTAAGTEST: gi|124721863|gb|EH813265.1|EH813265
genomic: TCCGCAAGATGAGgtaaactgaa ... ttacacgcagGTCTGGCGGTGGTGGTGCAACTGAGAAGAAGAAGTGAACGTCATCTTAAGT
EST: AGAGAGGAGATGTCCAGTGTTCTCCGCAAGATGAG GTCTGGCGGTGGTGGTGCAACTGAGAAGAAGAAGTGAACGTCATCTTAAGTEST: gi|124986208|gb|EL058744.1|EL058744
genomic: AGAGAGGAGATGTCCAGTGTTCTCCGCAAGATGAGgtaaactgaa ... ttacacgcagGTCTGGCGGTGGTGGTGCAACTGAGAAGAAGAAGTGAACGTCATCTTAAGT
EST: GAGCCAAGCGAAAGAGAGAGGAGATGTCCAGTGTTACTCCGCAAGATGAG GTCTGGCGGTGGTEST: gi|125176919|gb|EL196220.1|EL196220
genomic: GAGCCAAGCGAAAGAGAGAGGAGATGTCCAGTGTT-CTCCGCAAGATGAGgtaaactgaa ... ttacacgcagGTCTGGCGGTGGT
EST: GAGGAGATGTCCAGTGTTCTCCGCAAGATGAG GTCTGGCGGTGGTGGTGCAACTGAGAAGAAGAAGTGAACGTCATCTTAAGTEST: gi|164155529|gb|ES142993.1|ES142993
genomic: GAGGAGATGTCCAGTGTTCTCCGCAAGATGAGgtaaactgaa ... ttacacgcagGTCTGGCGGTGGTGGTGCAACTGAGAAGAAGAAGTGAACGTCATCTTAAGT
EST: CCAAGCGAAAGAGAGAGGAGATGTCCAGTGTTCTCCGCAAGATGAG GTCTGGCGGTGGTGGTGCAACTGAGAAGAAGAAGTGAACGTCATCTTAAGTEST: gi|164106639|gb|EL968184.1|EL968184
genomic: CCAAGCGAAAGAGAGAGGAGATGTCCAGTGTTCTCCGCAAGATGAGgtaaactgaa ... ttacacgcagGTCTGGCGGTGGTGGTGCAACTGAGAAGAAGAAGTGAACGTCATCTTAAGT
EST: GAGAGAGGAGATGTCCAGTGTTCTCCGCAAGATGAG GTCTGGCGGTGGTGGTGCAACTGAGAAGAAGAAGTGAACGTCATEST: gi|125011372|gb|EL083641.1|EL083641
genomic: GAGAGAGGAGATGTCCAGTGTTCTCCGCAAGATGAGgtaaactgaa ... ttacacgcagGTCTGGCGGTGGTGGTGCAACTGAGAAGAAGAAGTGAACGTCAT
EST: AGAGCCAAGCGAAAGAGAGAGGAGATGTCCAGTGTTCTCCGCAAGATGAG GTCTGGCGGTGGTGGTGCAACTEST: gi|124890009|gb|EH968911.1|EH968911
genomic: AGAGCCAAGCGAAAGAGAGAGGAGATGTCCAGTGTTCTCCGCAAGATGAGgtaaactgaa ... ttacacgcagGTCTGGCGGTGGTGGTGCAACT
EST: AGAGGAGATGTCCAGTGTTCTCCGCAAGATGAG GTCTGGCGGTGGTGGTGCAACTGAGAAGAAEST: gi|124735410|gb|EH826812.1|EH826812
genomic: AGAGGAGATGTCCAGTGTTCTCCGCAAGATGAGgtaaactgaa ... ttacacgcagGTCTGGCGGTGGTGGTGCAACTGAGAAGAA
EST: AGAGCCAAGCGAAAGAGAGAGGAGATGTCCAGTGTTCTCCGCAAGATGAG GTCTGGCGGTGGTGGTGCAACTEST: gi|164216074|gb|ES047637.1|ES047637
genomic: AGAGCCAAGCGAAAGAGAGAGGAGATGTCCAGTGTTCTCCGCAAGATGAGgtaaactgaa ... ttacacgcagGTCTGGCGGTGGTGGTGCAACT
EST: GTTCTCCGCAAGATGAG GTCTGGCGGTGGTGGTGCAACTGAGAAGAAGAAGTGAACGTCATCTTAAGTEST: gi|164058093|gb|ES100412.1|ES100412
genomic: GTTCTCCGCAAGATGAGgtaaactgaa ... ttacacgcagGTCTGGCGGTGGTGGTGCAACTGAGAAGAAGAAGTGAACGTCATCTTAAGT
EST: AGCGAAAGAGAGAGGAGATGTCCAGTTGTTCTCCGCAAGATGAG GTCTGGCGGTGGTGGTGCAACTGAGAAGAAGAEST: gi|125091638|gb|EL149461.1|EL149461
genomic: AGCGAAAGAGAGAGGAGATGTCCAG-TGTTCTCCGCAAGATGAGgtaaactgaa ... ttacacgcagGTCTGGCGGTGGTGGTGCAACTGAGAAGAAGA
EST: GAGAGAGGAGATGTCCAGTGTTCTCCGCAAGATGAG GTCTGGCGGTGGTGGTGCAACTGAGAAGAAGAAGTGAACGTCATCTTAAGT
genomic: GAGAGAGGAGATGTCCAGTGTTCTCCGCAAGATGAGgtaaactgaa ... ttacacgcagGTCTGGCGGTGGTGGTGCAACTGAGAAGAAGAAGTGAACGTCATCTTAAGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTGCTAAGAGGAAGTTGGGAACCCACAAGAGAGCCAAGCGAAAGAGAGAGGAGATGTCCAGTGTTCTCCGCAAGATGAGgtaaactgaacaatcgaacaagcttattgttggctttgtttttctcaattcaaaaaccaattcttttatagtaattactgatttttgggactttgtttacttacacgcag
- - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG