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TGTACACAGTATCACTGAGACAGCAGTTACAGGACGTCTCTAAGAAGCTAGTTGGTGCTCTGCATTATAACAAGGACGGTTCTGTGAATAACAGgcaagagtttatctttttccgtgtatctttaattttccttccatctttttcctttactattatttgttagtgaaacttgaagaattgattccactggttc...
species | Arabidopsis thaliana |
transcript | AT3G53390.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: AAGCTAGTTGGTGCTCTGCATTATAACAAGGACGGTTCTGTGAATAACAG TCGTTGCACTAGTGTTTCTTGGGTGCCTGGAGGTGATEST: gi|164040436|gb|ES146017.1|ES146017
genomic: AAGCTAGTTGGTGCTCTGCATTATAACAAGGACGGTTCTGTGAATAACAGgcaagagttt ... tttgtaacagTCGTTGCACTAGTATTTCTTGGGTGCCTGGAGGTGAT
EST: AAGCTAGTTGGTGCTCTGCATTATAACAAGGACGGTTCTGTGAATAACAG TCGTTGCACTAGTTGTTTCTTGGGTGCCTGGAGGTGAT
genomic: AAGCTAGTTGGTGCTCTGCATTATAACAAGGACGGTTCTGTGAATAACAGgcaagagttt ... tttgtaacagTCGTTGCACTAGTA-TTTCTTGGGTGCCTGGAGGTGAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGTACACAGTATCACTGAGACAGCAGTTACAGGACGTCTCTAAGAAGCTAGTTGGTGCTCTGCATTATAACAAGGACGGTTCTGTGAATAACAGgcaagagtttatctttttccgtgtatctttaattttccttccatctttttcctttactattatttgttagtgaaacttgaagaattgattccactggttc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tctttttc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tttccttc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaagaat