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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CATACTCAAGGTCCATTGTTGGTGCTACCTTGGAAGTAATTCAGAAGAAGAGAGCTGAGAAGCCTGAAGTTCGTGATGCAGCCAGGGAAGCTGCTCTGCGgttagttttctccctctgtcaaatcatccaactaggattaaaatagttatatttgacttaataaatgtattgtgatgatgattcaacaaacag

Basic information

species Arabidopsis thaliana
transcript AT3G53020.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G53020.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: LOC_Os05g40820.3 (Oryza sativa), 5'ss of exon 5
CATACTCAAGGTCCATTGTTGGTGCTACCTTGGAAGTAATTCAGAAGAAGAGAGCTGAGAAGCCTGAAGTTCGTGATGCAGCCAGGGAAGCTGCTCTGCGgttagttttctccctctgtcaa-atcatccaactaggattaaaatagttatatttgact--taataaatgtattgtgatgatgattcaacaaacag-------
||||||| ||||| |||||||||||| | |||||||| || || |||||||||||||| |||||||||||||||||||| || || ||||||||||| ||||  | | | |||||   | |    |||  |    || |   | | |||  |    | |    |   ||| | |   |   ||   |   | |  |       
CATACTCTAGGTCAATTGTTGGTGCTTCGTTGGAAGTCATCCAAAAGAAGAGAGCTGAAAAGCCTGAAGTTCGTGATGCTGCTAGAGAAGCTGCTCTTCGgtatgctctttccctgaatgattgccatttagactggtt---actggttccaacaaagtatccacccatggaatagaacattgccactctatatgggttacat

upper sequence: AT3G53020.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: LOC_Os07g12250.1 (Oryza sativa), 5'ss of exon 5
CATACTCAAGGTCCATTGTTGGTGCTACCTTGGAAGTAATTCAGAAGAAGAGAGCTGAGAAGCCTGAAGTTCGTGATGCAGCCAGGGAAGCTGCTCTGCGgt----tagttttctccctct---gtcaaatcatccaactaggattaaa-atagttatatttgacttaataaatgtattgtgatgatgat-tcaacaaacag
| |||||  |||| || |||||||||||| | ||||| || ||||||||||||||||||||||| || |||||||||||||| |||||| | ||||| ||||    || | |   || |||   ||  |   || |   ||  |  |   ||   |  ||||||   |   |||| |||   |  |   | ||| |  ||  
CGTACTCCCGGTCTATAGTTGGTGCTACCCTTGAAGTCATCCAGAAGAAGAGAGCTGAGAAGCCAGAGGTTCGTGATGCAGCAAGGGAATCCGCTCTTCGgtatgctattctatgccatctctggtttatggattcttttaacaccattcatgtatggatttgaagaagccaatgcatttcaaccacattctcatcttac--

upper sequence: AT3G53020.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: LOC_Os01g59990.1 (Oryza sativa), 5'ss of exon 5
CATACTCAAGGTCCATTGTTGGTGCTACCTTGGAAGTAATTCAGAAGAAGAGAGCTGAGAAGCCTGAAGTTCGTGATGCAGCCAGGGAAGCTGCTCTGCGgttagttttctccctctgtcaaatcatccaactaggattaaaatagttatatttgacttaataaatgtattgtgatgatgattcaacaaacag-----------
|||||||| |||| ||||||||||||||  ||||||| || || ||||||||   |||||| |||||||| |||||||||||||| ||||| ||||| ||||   |||||  ||| | | |    ||    || | ||| | |||  |  |||| | ||  |   || | |   ||  |  ||        |            
CATACTCACGGTCAATTGTTGGTGCTACACTGGAAGTTATCCAAAAGAAGAGGAGTGAGAAACCTGAAGTCCGTGATGCAGCCAGAGAAGCGGCTCTCCGgtacattttccacctttct-aggctattggtct-gcatttacata--tccatttaaattgttttttgaacttgaatattatttatgttggtaaagctgaaatgg

upper sequence: AT3G53020.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GRMZM2G074898_T01 (Zea mays), 5'ss of exon 5
CATACTCAAGGTCCATTGTTGGTGCTACCTTGGAAGTAATTCAGAAGAAGAGAGCTGAGAAGCCTGAAGTTCGTGATGCAGCCAGGGAAGCTGCTCTGCGgtta-gttttctccctctgtcaaatcatcca--actaggattaa--aatagttatatttgacttaataaatgtattgtgat----gatgattcaacaaacag------------------------------------
||||||| ||||||||||| |||||| |||||||||| || ||||||||||||||||||||||||||||| || ||||| || || ||||||||||| |||| | |||| |  ||||  |  |     | |  ||      |||  |   |||   | |  |  |  |||| | || || |      || | |   | |||                                     
CATACTCGAGGTCCATTGTGGGTGCTTCCTTGGAAGTGATCCAGAAGAAGAGAGCTGAGAAGCCTGAAGTCCGAGATGCTGCTAGAGAAGCTGCTCTTCGgtaatgtttacatcctccatttatatgcctatgacagcagctaaccatctgtttggtgttgccaataaaatctgttttgctctcgagtgttactgtacacaaacgtgcaatacatttgaactgccgctgaccttacag

upper sequence: AT3G53020.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GRMZM2G142640_T03 (Zea mays), 5'ss of exon 4
CATACTCAAGGTCCATTGTTGGTGCTACCTTGGAAGTAATTCAGAAGAAGAGAGCTGAGAAGCCTGAAGTTCGTGATGCAGCCAGGGAAGCTGCTCTGCGgttagttttctccctctgtcaaatcatc-caactaggattaaaatagttatatttgacttaataaatgtattgtgatgatgattcaacaaacag
||||||| ||||| ||||| |||||| ||||||||||||| ||||||||||||||||||||||| || || || ||||| || || ||||||||||| ||||  || | |    ||| |   | |||  ||| |||      |      |||  |  |     |  || | |||  |||  || ||        
CATACTCCAGGTCAATTGTGGGTGCTTCCTTGGAAGTAATCCAGAAGAAGAGAGCTGAGAAGCCAGAGGTCCGCGATGCTGCTAGAGAAGCTGCTCTTCGgtatgtctgccagttctatattaccataacaaatagataccgatgctcaatacctctccgctcatttgaactgtcgtgaccatgcag-------

upper sequence: AT3G53020.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GRMZM2G110328_T04 (Zea mays), 5'ss of exon 4
CATACTCAAGGTCCATTGTTGGTGCTACCTTGGAAGTAATTCAGAAGAAGAGAGCTGAGAAGCCTGAAGTTCGTGATGCAGCCAGGGAAGCTGCTCTGCGgttagttttctccctctgt-------caaatcatccaactaggattaaaatagttatat-------ttgacttaataaatgtattgtgatgatg--attcaacaaacag-----------------------------------------------------------
||||||| ||||||||||| |||||| || | || || || ||||||||||| ||||||||||| || || || ||||| || || ||||||||||| ||||  | ||      | | |        ||| |   ||  |  |  ||  | |||  ||        ||| | |||  ||   | | |     ||  ||| |||| | |                                                            
CATACTCGAGGTCCATTGTGGGTGCTTCCCTAGAGGTGATCCAGAAGAAGAGGGCTGAGAAGCCCGAGGTCCGCGATGCTGCTAGAGAAGCTGCTCTTCGgtatgcttgtcgattttataataaaataaagccatcatttgtgcctatgacagtggtaactgtctgttggcctaaccaacaaaatctctgagtgacatttaacagaaacacaatagatacagatgcttgatatcaggctcatttgaacacccactgacacctttgcag

upper sequence: AT3G53020.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA19G37370.1 (Glycine max), 5'ss of exon 4
CATACTCAAGGTCCATTGTTGGTGCTACCTTGGAAGTAATTCAGAAGAAGAGAGCTGAGAAGCCTGAAGTTCGTGATGCAGCCAGGGAAGCTGCTCTGCGgttagttttctccctctgtcaaatcatccaacta-ggattaaaatagttatatttgacttaataaatgtat-tgtgatgatgat-tcaacaaacag-------
| ||||| ||||||||||||||||| |||||||||||||| ||||| ||||||||||||||||| |||||||| |||||||| |||||||||||||| ||||  ||||||    | | |        | |  |  | |||   ||  ||  |||||   | ||| |||| |   | || |   | ||| | |           
CTTACTCTAGGTCCATTGTTGGTGCGACCTTGGAAGTAATCCAGAAAAAGAGAGCTGAGAAGCCAGAAGTTCGAGATGCAGCTAGGGAAGCTGCTCTTCGgtgtgttttcattttatttgtttctgcctacttttgtatttgcatttttggatttg---ttatagatgtgtacataatcacattctcagccatttattttctt

upper sequence: AT3G53020.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA03G34700.1 (Glycine max), 5'ss of exon 4
CATACTCAAGGTCCATTGTTGGTGCTACCTTGGAAGTAATTCAGAAGAAGAGAGCTGAGAAGCCTGAAGTTCGTGATGCAGCCAGGGAAGCTGCTCTGCGgt-tagttttctccctctgtcaaatcatccaactaggattaaaatagttatatttgactta--ataaatgtat-tgtgatgatgat-tcaacaaacag--------
| ||||| ||||||||||||||||| ||  ||||||| || ||||| ||||||||||||||||| |||||||| |||||||| |||||||||||||| |||| |  ||||||   | |||       ||   |||   |   | | | | |  | || ||   ||| ||||   |   || | | | ||| | |            
CTTACTCTAGGTCCATTGTTGGTGCCACTCTGGAAGTTATCCAGAAAAAGAGAGCTGAGAAGCCAGAAGTTCGAGATGCAGCTAGGGAAGCTGCTCTTCGgtgtgtttttctttatttgtt------tctgcctactttcggatttgcttttctggatttgttatagatgtgcatacaatcacgttctcagccatttaattcctta

upper sequence: AT3G53020.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA10G07680.1 (Glycine max), 5'ss of exon 4
CATACTCAAGGTCCATTGTTGGTGCTACCTTGGAAGTAATTCAGAAGAAGAGAGCTGAGAAGCCTGAAGTTCGTGATGCAGCCAGGGAAGCTGCTCTGCGgttagttttctccctctgtcaaatcat--ccaactaggattaaaatagttatatttgacttaataaatgtattgtgatgatgattcaacaaacag------
| ||||| ||||||||||| ||||| || |||||||| || ||||| ||||||||||||||||| |||||||| ||||||   ||||||||||| || ||||  |||||     | ||||    |||   |   | |||||    |  ||| ||| ||    | |      || | || || | | |  ||| |       
CTTACTCCAGGTCCATTGTCGGTGCCACTTTGGAAGTTATCCAGAAAAAGAGAGCTGAGAAGCCAGAAGTTCGAGATGCAAATAGGGAAGCTGCCCTTCGgtgtgtttttgttttttgtctctgcatactctgtttggattcggctc-ttacattggaggataaagtacagttataattattaataagaaaataattggcc

upper sequence: AT3G53020.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA13G21520.1 (Glycine max), 5'ss of exon 4
CATACTCAAGGTCCATTGTTGGTGCTACCTTGGAAGTAATTCAGAAGAAGAGAGCTGAGAAGCCTGAAGTTCGTGATGCAGCCAGGGAAGCTGCTCTGCGgttagttttc-----tccctctgtcaaatcatccaactaggattaaaatagttatatttgacttaata-aatgtattgtgatgatgat--tcaacaaacag
| ||||| ||||| |||||||||||||| || ||||| || ||||| |||||| | |||||||| |||||||| |||||||| ||||||||    || ||||  |||||      |   |||||  |||  |     | |  ||     | ||   | | ||||   |  ||  |     || || ||  |  | ||  | 
CTTACTCTAGGTCTATTGTTGGTGCTACTTTAGAAGTTATCCAGAAAAAGAGAACCGAGAAGCCAGAAGTTCGAGATGCAGCTAGGGAAGCACAGCTTCGgtgtgtttttggtgttttgtctgtgtaatgtttggctttgctttcttggatttggctcttactttggatgataaagaacaattataattgttgataagaa-

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124755725|gb|EH845855.1|EH845855
EST:     TTCGTGATGCAGCCAGGGAAGCTGCTCTGCG                         TGAGATCAAGGAAAGAATCAAAAAGACCAAAGATGAAAAGAAGGCTAAGAA
genomic: TTCGTGATGCAGCCAGGGAAGCTGCTCTGCGgttagttttc ... caacaaacagTGAGATCAAGGAAAGAATCAAAAAGACCAAAGATGAAAAGAAGGCTAAGAA
EST: gi|164035136|gb|EL969111.1|EL969111
EST:     GTTCGTGATGCAGCCAGGGAAGCTGCTCTGCG                         TGAGATCAAGGAAAGAATCAAAAAGACCAAAGATGAAAAGAAGGCTAAGAA
genomic: GTTCGTGATGCAGCCAGGGAAGCTGCTCTGCGgttagttttc ... caacaaacagTGAGATCAAGGAAAGAATCAAAAAGACCAAAGATGAAAAGAAGGCTAAGAA
EST: gi|164222814|gb|ES039643.1|ES039643
EST:     GGGAAGCTGCTCTGCG                         TGAGATCAAGGAAAGAATCAAAAAAGACCAAAGATGAAAAGAAGGCTAAGA
genomic: GGGAAGCTGCTCTGCGgttagttttc ... caacaaacagTGAGATCAAGGAAAGAATC-AAAAAGACCAAAGATGAAAAGAAGGCTAAGA
EST: gi|164132166|gb|ES040863.1|ES040863
EST:     TGAGAAGCCTGAAGTTCGTGATGCAGCCAGGGAAGCTGCTCTGCG                         TGAGATCAAGGAAAGAATCAAAAAAGACCAAAGATGAAAAGAAGGCTAAGA
genomic: TGAGAAGCCTGAAGTTCGTGATGCAGCCAGGGAAGCTGCTCTGCGgttagttttc ... caacaaacagTGAGATCAAGGAAAGAATCAAAAA-GACCAAAGATGAAAAGAAGGCTAAGA
EST: gi|116480001|gb|EG522593.1|EG522593
EST:     AGAGCTGAGAAGCCTGAAGTTCGTGATGCAGCCAGGGAAGCTGCTTTGCG                         TGAGATCAAGGAAAGAATCAAAAAGACCAAAGATGAAAAGAAGGCTAAGAA
genomic: AGAGCTGAGAAGCCTGAAGTTCGTGATGCAGCCAGGGAAGCTGCTCTGCGgttagttttc ... caacaaacagTGAGATCAAGGAAAGAATCAAAAAGACCAAAGATGAAAAGAAGGCTAAGAA
EST: gi|86045768|gb|DR341523.1|DR341523
EST:     AGAGCTGAGAACCCTGAAGTTCGTGATGCAGCCAGGGAAGCTGCTCTGCG                         TGAGATCAAGGAAAGAATCAAAAAGACCAAAGATGAAAAGAAGGCTAAGAA
genomic: AGAGCTGAGAAGCCTGAAGTTCGTGATGCAGCCAGGGAAGCTGCTCTGCGgttagttttc ... caacaaacagTGAGATCAAGGAAAGAATCAAAAAGACCAAAGATGAAAAGAAGGCTAAGAA
EST: gi|116472836|gb|EG515428.1|EG515428
EST:     AGAGCTGAGAAGCCTGAAGTTCGTGATGCAGCCAGGGAAGCTGCTTTGCG                         TGAGATCAAGGAAAGAATCAAAAAGACCAAAGATGAAAAGAAGGCTAAGAA
genomic: AGAGCTGAGAAGCCTGAAGTTCGTGATGCAGCCAGGGAAGCTGCTCTGCGgttagttttc ... caacaaacagTGAGATCAAGGAAAGAATCAAAAAGACCAAAGATGAAAAGAAGGCTAAGAA
EST: gi|116480002|gb|EG522594.1|EG522594
EST:     AGAGCTGAGAAGCCTGAAGTTCGTGATGCAGCCAGGGAAGCTGCTCTGCG                         TGAGATCAAGGAAAGAATCAAAAAGACCAAAGATGAAAAGAAGGCTAAGAA
genomic: AGAGCTGAGAAGCCTGAAGTTCGTGATGCAGCCAGGGAAGCTGCTCTGCGgttagttttc ... caacaaacagTGAGATCAAGGAAAGAATCAAAAAGACCAAAGATGAAAAGAAGGCTAAGAA
EST: gi|124897550|gb|EH973764.1|EH973764
EST:     CAGCCAGGGAAGCTGCTCTGCG                         T
genomic: CAGCCAGGGAAGCTGCTCTGCGgttagttttc ... caacaaacag-
EST: gi|124897550|gb|EH973764.1|EH973764
EST:     CAGCCAGGGAAGCTGCTCTGCG                         T
genomic: CAGCCAGGGAAGCTGCTCTGCGgttagttttc ... caacaaacag-
EST: gi|164196210|gb|EL979579.1|EL979579
EST:     AGAGCTGAGAAGCCTGAAGTTCGTGATGCAGCCAGGGAAGCTGCTCTGCG                         TGAGATCAAGG
genomic: AGAGCTGAGAAGCCTGAAGTTCGTGATGCAGCCAGGGAAGCTGCTCTGCGgttagttttc ... caacaaacagTGAGATCAAGG
EST: gi|116410667|gb|EG453259.1|EG453259
EST:     AGAGCTGAGAAGCCTGAAGTTCGTGATGCAGCCAGGGAAGCTGCTCTGCG                         TGAGATCAAGGAAAGAATCAAAAAGACCAAAGATGAAAAGAAGGCTAAGAA
genomic: AGAGCTGAGAAGCCTGAAGTTCGTGATGCAGCCAGGGAAGCTGCTCTGCGgttagttttc ... caacaaacagTGAGATCAAGGAAAGAATCAAAAAGACCAAAGATGAAAAGAAGGCTAAGAA
EST: gi|164169859|gb|ES083914.1|ES083914
EST:     AGCTGCTCTGCG                         TGAGATCAAGGAAAGAATCAAAAAGACCAAAGATGAAAAGAAGGCTAAGAA
genomic: AGCTGCTCTGCGgttagttttc ... caacaaacagTGAGATCAAGGAAAGAATCAAAAAGACCAAAGATGAAAAGAAGGCTAAGAA
EST: gi|116452319|gb|EG494911.1|EG494911
EST:     AGAGCTGAGAAGCCTGAAGTTCGTGATGCAGCCAGGGAAGCTGCTCTGCG                         TGAGATCAAGGAAAGAATCAAAAAGACCAAAGATGAAAAGAAGGCTAAGAA
genomic: AGAGCTGAGAAGCCTGAAGTTCGTGATGCAGCCAGGGAAGCTGCTCTGCGgttagttttc ... caacaaacagTGAGATCAAGGAAAGAATCAAAAAGACCAAAGATGAAAAGAAGGCTAAGAA
EST: gi|164160729|gb|ES025920.1|ES025920
EST:     TTCGTGATGCAGCCTGGGAAGCTGCTCTGCG                         TGAGATCAAGGAAAGAATCAAAAAGACCAAAGATGAAAAGAAGGCTAAGAA
genomic: TTCGTGATGCAGCCAGGGAAGCTGCTCTGCGgttagttttc ... caacaaacagTGAGATCAAGGAAAGAATCAAAAAGACCAAAGATGAAAAGAAGGCTAAGAA
EST: gi|86078101|gb|DR373858.1|DR373858
EST:     AGAGCTGAGAAGCCTGAAGTTCGTGATGCAGCCAGGGAAGCTGCTCTGCG                         TGAGATCAAGGAAAGAATCAAAAAGACCAAAGATGAAAAGAAGGCTAAGAA
genomic: AGAGCTGAGAAGCCTGAAGTTCGTGATGCAGCCAGGGAAGCTGCTCTGCGgttagttttc ... caacaaacagTGAGATCAAGGAAAGAATCAAAAAGACCAAAGATGAAAAGAAGGCTAAGAA
EST: gi|164008791|gb|ES162368.1|ES162368
EST:     AGAGCTGAGAAGCCTGAAGTTCGTGATGCAGCCAGGGAAGCTGCTCTGCG                         TGAGATCAAGGAAAGAATCAAAAAGACCAAAGATGAAAAGAAGG
genomic: AGAGCTGAGAAGCCTGAAGTTCGTGATGCAGCCAGGGAAGCTGCTCTGCGgttagttttc ... caacaaacagTGAGATCAAGGAAAGAATCAAAAAGACCAAAGATGAAAAGAAGG
EST: gi|164021080|gb|ES123816.1|ES123816
EST:     GAGCTGAGAAGCCTGAAGTTCGTGATGCCAGCCAGGGAAGCTGCTCTGCG                         TGAGATCAAGGAAAGAATCAAAAAGACCAAAGATG
genomic: GAGCTGAGAAGCCTGAAGTTCGTGATG-CAGCCAGGGAAGCTGCTCTGCGgttagttttc ... caacaaacagTGAGATCAAGGAAAGAATCAAAAAGACCAAAGATG
EST: gi|125020474|gb|EL092743.1|EL092743
EST:     AGGGAAGCTGCTCTGCG                         TGAGATCAAGGAAAGAATCAAAAAGACCAAAGATGAAAAGAAGGCTAAGAA
genomic: AGGGAAGCTGCTCTGCGgttagttttc ... caacaaacagTGAGATCAAGGAAAGAATCAAAAAGACCAAAGATGAAAAGAAGGCTAAGAA
EST: gi|86082625|gb|DR378384.1|DR378384
EST:     AGAGCTGAGAAGCCTGAAGTTCGTGATGCAGCCAGGGAAGCTGCTCTGCG                         TGAGATCAAGGAAAGAATCAAAAAGACCAAAGATGAAAAGAAGGCTAAGAA
genomic: AGAGCTGAGAAGCCTGAAGTTCGTGATGCAGCCAGGGAAGCTGCTCTGCGgttagttttc ... caacaaacagTGAGATCAAGGAAAGAATCAAAAAGACCAAAGATGAAAAGAAGGCTAAGAA
EST: gi|164168482|gb|ES127117.1|ES127117
EST:     GAGAAGCCTGAAGTTCGTGATGCAGCCAGGGAAGCTGCTCTGCG                         TGAGATCAAGGAAAAGAATCAAAAAGACCAAAGATGAAAAGAAGGCTAAGA
genomic: GAGAAGCCTGAAGTTCGTGATGCAGCCAGGGAAGCTGCTCTGCGgttagttttc ... caacaaacagTGAGATCAAGGAAA-GAATCAAAAAGACCAAAGATGAAAAGAAGGCTAAGA
EST: gi|125158654|gb|EL187144.1|EL187144
EST:     GCAGCCAGGGAAGCTGCTCTGCG                         T
genomic: GCAGCCAGGGAAGCTGCTCTGCGgttagttttc ... caacaaacag-
EST: gi|125158654|gb|EL187144.1|EL187144
EST:     GCAGCCAGGGAAGCTGCTCTGCG                         T
genomic: GCAGCCAGGGAAGCTGCTCTGCGgttagttttc ... caacaaacag-
EST: gi|164010284|gb|ES138360.1|ES138360
EST:     TCGTGATGCAGCCAGGGAAGCTGCTCTGCG                         TGAGATCAAGGAAAGAATCAAAAAGACCAAAGATGAAAAGAAGGCTAAGAA
genomic: TCGTGATGCAGCCAGGGAAGCTGCTCTGCGgttagttttc ... caacaaacagTGAGATCAAGGAAAGAATCAAAAAGACCAAAGATGAAAAGAAGGCTAAGAA
EST: gi|164031177|gb|ES079664.1|ES079664
EST:     AGAGCTGAGAAGCCTGAAGTTCGTGATGCAGCCAGGGAAGCTGCTCTGCG                         TGAGATCAAGGAAAGAATCAAAA-GACCAAAGATG
genomic: AGAGCTGAGAAGCCTGAAGTTCGTGATGCAGCCAGGGAAGCTGCTCTGCGgttagttttc ... caacaaacagTGAGATCAAGGAAAGAATCAAAAAGACCAAAGATG
EST: gi|164016151|gb|ES076402.1|ES076402
EST:     GATGCAGCCAGGGAAGCTGCTCTGCG                         TGAGATCAAGGAAAGAATCAAAAAAGACCAAAGATGAAAAGAAGGCTAAGA
genomic: GATGCAGCCAGGGAAGCTGCTCTGCGgttagttttc ... caacaaacagTGAGATCAAGGAAAGAATC-AAAAAGACCAAAGATGAAAAGAAGGCTAAGA
EST: gi|116483020|gb|EG525612.1|EG525612
EST:     AGAGCTGAGAAGCCTGAAGTTCGTGATGCAGCCAGGGAAGCTGCTCTGCG                         TGAGATCAAGGAAAGAATCAAAAAGACCAAAGATGAAAAGAAGGCTAAGAA
genomic: AGAGCTGAGAAGCCTGAAGTTCGTGATGCAGCCAGGGAAGCTGCTCTGCGgttagttttc ... caacaaacagTGAGATCAAGGAAAGAATCAAAAAGACCAAAGATGAAAAGAAGGCTAAGAA
EST: gi|163993460|gb|ES080128.1|ES080128
EST:     AGAGCTGAGAAGCCTGAAGTTCGTGATGCAGCCAGGGAAGCTGCTCTGCG                         TGAGATCAAGGA
genomic: AGAGCTGAGAAGCCTGAAGTTCGTGATGCAGCCAGGGAAGCTGCTCTGCGgttagttttc ... caacaaacagTGAGATCAAGGA
EST: gi|164114703|gb|ES082366.1|ES082366
EST:     TGAGAAGCCTGAAGTTCGTGATGCAGCCAGGGAAGCTGCTCTGCG                         TGAGATCAAGGAAAGAATCAAAAAGACCAAAGATGAAAAGAAGGCTAAGAA
genomic: TGAGAAGCCTGAAGTTCGTGATGCAGCCAGGGAAGCTGCTCTGCGgttagttttc ... caacaaacagTGAGATCAAGGAAAGAATCAAAAAGACCAAAGATGAAAAGAAGGCTAAGAA
EST: gi|163991069|gb|ES148691.1|ES148691
EST:     AGAGCTGAGAAGCCTGAAGTTCGTGATGCAGCCAGGGAAGCTGCTCTGCG                         TGAGATCAAGG
genomic: AGAGCTGAGAAGCCTGAAGTTCGTGATGCAGCCAGGGAAGCTGCTCTGCGgttagttttc ... caacaaacagTGAGATCAAGG
EST: gi|116472837|gb|EG515429.1|EG515429
EST:     AGAGCTGAGAAGCCTGAAGTTCGTGATGCAGCCAGGGAAGCTGCTCTGCG                         TGAGATCAAGGAAAGAATCAAAAAGACCAAAGATGAAAAGAAGGCTAAGAA
genomic: AGAGCTGAGAAGCCTGAAGTTCGTGATGCAGCCAGGGAAGCTGCTCTGCGgttagttttc ... caacaaacagTGAGATCAAGGAAAGAATCAAAAAGACCAAAGATGAAAAGAAGGCTAAGAA
EST: gi|125201795|gb|EL216749.1|EL216749
EST:     AAGCTGCTCTGCG                         TGAGATCAAGGAAAGAATCAAAAAGACCAAAGATGAAAAGAAGGCTAAGAA
genomic: AAGCTGCTCTGCGgttagttttc ... caacaaacagTGAGATCAAGGAAAGAATCAAAAAGACCAAAGATGAAAAGAAGGCTAAGAA
EST: gi|164072079|gb|ES064661.1|ES064661
EST:     CCTGAAGTTCGTGATGCAGCCAGGGAAGCTGCTCTGCG                         TGAGATCAAGGAAAGAATCAAAAAGACCAAAGATGAAAAGAAGGCTAAGAA
genomic: CCTGAAGTTCGTGATGCAGCCAGGGAAGCTGCTCTGCGgttagttttc ... caacaaacagTGAGATCAAGGAAAGAATCAAAAAGACCAAAGATGAAAAGAAGGCTAAGAA
EST: gi|124727773|gb|EH819175.1|EH819175
EST:     TTCGTGATGCAGCCAGGGAAGCTGCTCTGCG                         TGAGATCAAGGAAAGAATCAAAAAGACCAAAGATGAAAAGAAGGCTAAGAA
genomic: TTCGTGATGCAGCCAGGGAAGCTGCTCTGCGgttagttttc ... caacaaacagTGAGATCAAGGAAAGAATCAAAAAGACCAAAGATGAAAAGAAGGCTAAGAA
EST: gi|164112667|gb|EL979360.1|EL979360
EST:     AGAGCTGAGAAGCCTGAAGTTCGTGATGCAGCCAGGGAAGCTGCTCTGCG                         TGAGATCAAGGAAAGAATCAAAAAGACCAAAGATGAA
genomic: AGAGCTGAGAAGCCTGAAGTTCGTGATGCAGCCAGGGAAGCTGCTCTGCGgttagttttc ... caacaaacagTGAGATCAAGGAAAGAATCAAAAAGACCAAAGATGAA
EST: gi|124978670|gb|EL051816.1|EL051816
EST:     GATGCAGCCAGGGAAGCTGCTCTGCG                         TGAGATCAAGGAAAGAATCAAAAAGACCAAAGATGAAAAGAAGG
genomic: GATGCAGCCAGGGAAGCTGCTCTGCGgttagttttc ... caacaaacagTGAGATCAAGGAAAGAATCAAAAAGACCAAAGATGAAAAGAAGG
EST: gi|116483018|gb|EG525610.1|EG525610
EST:     AGAGCTGAGAAGCCTGAAGTTCGTGATGCAGCCAGGGAAGCTGCTCTGCG                         TGAGATCAAGGAAAGAATCAAAAAGACCAAAGATGAAAAGAAGGCTAAGAA
genomic: AGAGCTGAGAAGCCTGAAGTTCGTGATGCAGCCAGGGAAGCTGCTCTGCGgttagttttc ... caacaaacagTGAGATCAAGGAAAGAATCAAAAAGACCAAAGATGAAAAGAAGGCTAAGAA
EST: gi|125317361|gb|EL331446.1|EL331446
EST:     CTGAAGTTCGTGATGCAGCCAGGGTAAGTCTGCTCTGCG                         TGAGATCAAGGAAAGAATCAAAAAGACCAAAGATGAAAAGAAGGCTAAGAA
genomic: CTGAAGTTCGTGATGCAGCCAGGG-AAG-CTGCTCTGCGgttagttttc ... caacaaacagTGAGATCAAGGAAAGAATCAAAAAGACCAAAGATGAAAAGAAGGCTAAGAA
EST: gi|124752983|gb|EH843113.1|EH843113
EST:     AGTTCGTGATGCAGCCAGGGAAGCTGCTCTGCG                         TGAGATCAAGGAAAGAATCAAAAA
genomic: AGTTCGTGATGCAGCCAGGGAAGCTGCTCTGCGgttagttttc ... caacaaacagTGAGATCAAGGAAAGAATCAAAAA
EST: gi|125091817|gb|EL149640.1|EL149640
EST:     AAGCTGCTCTGCG                         TGAGATCAAGGAAAGAATCAAAAAGACCAAAGATGAAAAGAAGGCTAAGAA
genomic: AAGCTGCTCTGCGgttagttttc ... caacaaacagTGAGATCAAGGAAAGAATCAAAAAGACCAAAGATGAAAAGAAGGCTAAGAA
EST: gi|125124938|gb|EL170625.1|EL170625
EST:     CCTGAGGTTCGTGATGCAGCCAGGGAAGCTGCTCTGCG                         TGAGATCAAGGAAAAGAATCAAAAAGACCAAAGATGAAAAGAAGGCTAAGA
genomic: CCTGAAGTTCGTGATGCAGCCAGGGAAGCTGCTCTGCGgttagttttc ... caacaaacagTGAGATCAAGG-AAAGAATCAAAAAGACCAAAGATGAAAAGAAGGCTAAGA
EST: gi|86081830|gb|DR377589.1|DR377589
EST:     AGAGCTGAGAAGCCTGAAGTTCGTGATGCAGCCAGGGAAGCTGCTCTGCG                         TGAGATCAAGGAAAGAATCAAAAAGACCAAAGATGAAAAGAAGGCTAAGAA
genomic: AGAGCTGAGAAGCCTGAAGTTCGTGATGCAGCCAGGGAAGCTGCTCTGCGgttagttttc ... caacaaacagTGAGATCAAGGAAAGAATCAAAAAGACCAAAGATGAAAAGAAGGCTAAGAA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CATACTCAAGGTCCATTGTTGGTGCTACCTTGGAAGTAATTCAGAAGAAGAGAGCTGAGAAGCCTGAAGTTCGTGATGCAGCCAGGGAAGCTGCTCTGCGgttagttttctccctctgtcaaatcatccaactaggattaaaatagttatatttgacttaataaatgtattgtgatgatgattcaacaaacag

- - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGCT