1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
GGGCTGCTAGACTTCCAGGTTTCCATTGCTGTGTTGGTAGTGGTGGAGAAAAACTGCTTCCTGAATCCTACAAGCAGAAAGgtaatgaactgtctgcaacatcaccaatatcaatgccctgctcatctgtgtagtcccactgatctattataacattacattactctctatacaagcttaattacttatgttattggaactaaatcgtgctatgatttttttgttatccattgtgtttgtag
species | Arabidopsis thaliana |
transcript | AT3G52880.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: TGTTGGTAGTGGTGGAGAAAAACTGCTTCCTGAATCCTACAAGCAGAAAG GAATTGAGTTGATACTAAGCACAGAAATAGTGAAAGCTGATCTCTCTGCCAEST: gi|86038353|gb|DR334108.1|DR334108
genomic: TGTTGGTAGTGGTGGAGAAAAACTGCTTCCTGAATCCTACAAGCAGAAAGgtaatgaact ... gtgtttgtagGAATTGAGTTGATACTAAGCACAGAAATAGTGAAAGCTGATCTCTCTGCCA
EST: TGTTGGTAGTGGTGGAGAAAAACTGCTTCCTGAATCCTACAAGCAGAAAG GAATTGAGTTGATACTAAGCACAGAAATAGTGAAAGCTGATCTCTCTGCCAEST: gi|86038384|gb|DR334139.1|DR334139
genomic: TGTTGGTAGTGGTGGAGAAAAACTGCTTCCTGAATCCTACAAGCAGAAAGgtaatgaact ... gtgtttgtagGAATTGAGTTGATACTAAGCACAGAAATAGTGAAAGCTGATCTCTCTGCCA
EST: TGTTGGTAGTGGTGGAGAAAAACTGCTTCCTGAATCCTACAAGCAGAAAG GAATTGAGTTGATACTAAGCACAGAAATAGTGAAAGCTGATCTCTCTGCCAEST: gi|86038379|gb|DR334134.1|DR334134
genomic: TGTTGGTAGTGGTGGAGAAAAACTGCTTCCTGAATCCTACAAGCAGAAAGgtaatgaact ... gtgtttgtagGAATTGAGTTGATACTAAGCACAGAAATAGTGAAAGCTGATCTCTCTGCCA
EST: TGTTGGTAGTGGTGGAGAAAAACTGCTTCCTGAATCCTACAAGCAGAAAG GAATTGAGTTGATACTAAGCACAGAAATAGTGAAAGCTGATCTCTCTGCCAEST: gi|86038373|gb|DR334128.1|DR334128
genomic: TGTTGGTAGTGGTGGAGAAAAACTGCTTCCTGAATCCTACAAGCAGAAAGgtaatgaact ... gtgtttgtagGAATTGAGTTGATACTAAGCACAGAAATAGTGAAAGCTGATCTCTCTGCCA
EST: TGTTGGTAGTGGTGGAGAAAAACTGCTTCCTGAATCCTACAAGCAGAAAG GAATTGAGTTGATACTAAGCACAGAAATAGTGAAAGCTGATCTCTCTGCCAEST: gi|86038364|gb|DR334119.1|DR334119
genomic: TGTTGGTAGTGGTGGAGAAAAACTGCTTCCTGAATCCTACAAGCAGAAAGgtaatgaact ... gtgtttgtagGAATTGAGTTGATACTAAGCACAGAAATAGTGAAAGCTGATCTCTCTGCCA
EST: TGTTGGTAGTGGTGGAGAAAAACTGCTTCCTGAATCCTACAAGCAGAAAG GAATTGAGTTGATACTAAGCACAGAAATAGTGAAAGCTGATCTCTCTGCCAEST: gi|86038359|gb|DR334114.1|DR334114
genomic: TGTTGGTAGTGGTGGAGAAAAACTGCTTCCTGAATCCTACAAGCAGAAAGgtaatgaact ... gtgtttgtagGAATTGAGTTGATACTAAGCACAGAAATAGTGAAAGCTGATCTCTCTGCCA
EST: TGTTGGTAGTGGTGGAGAAAAACTGCTTCCTGAATCCTANNNGCAGAAAG GAATTGAGTTGATACTAAGCACAGAAATAGTGAAAGCTGATCTCTCTGCCAEST: gi|86038370|gb|DR334125.1|DR334125
genomic: TGTTGGTAGTGGTGGAGAAAAACTGCTTCCTGAATCCTACAAGCAGAAAGgtaatgaact ... gtgtttgtagGAATTGAGTTGATACTAAGCACAGAAATAGTGAAAGCTGATCTCTCTGCCA
EST: TGTTGGTAGTGGTGGAGAAAAACTGCTTCCTGAATCCTACAAGCAGAAAG GAATTGAGTTGATACTAAGCACAGAAATAGTGAAAGCTGATCTCTCTGCCAEST: gi|125243834|gb|EL257919.1|EL257919
genomic: TGTTGGTAGTGGTGGAGAAAAACTGCTTCCTGAATCCTACAAGCAGAAAGgtaatgaact ... gtgtttgtagGAATTGAGTTGATACTAAGCACAGAAATAGTGAAAGCTGATCTCTCTGCCA
EST: TGTTGGTAGTGGTGGAGAAAAACTGCTTCCTGAATCCTACAAGCAGAAAG GAATTGAGTTGATACTAAGCEST: gi|86038368|gb|DR334123.1|DR334123
genomic: TGTTGGTAGTGGTGGAGAAAAACTGCTTCCTGAATCCTACAAGCAGAAAGgtaatgaact ... gtgtttgtagGAATTGAGTTGATACTAAGC
EST: TGTTGGTAGTGGTGGAGAAAAACTGCTTCCTGAATCCTACAAGCAGAAAG GAATTGAGTTGATACTAAGCACAGAAATAGTGAAAGCTGATCTCTCTGCCAEST: gi|86038365|gb|DR334120.1|DR334120
genomic: TGTTGGTAGTGGTGGAGAAAAACTGCTTCCTGAATCCTACAAGCAGAAAGgtaatgaact ... gtgtttgtagGAATTGAGTTGATACTAAGCACAGAAATAGTGAAAGCTGATCTCTCTGCCA
EST: TGTTGGTAGTGGTGGAGAAAAACTGCTTCCTGAATCCTACAAGCAGAAAG GAATTGAGTTGATACTAAGCACAGAAATAGTGAAAGCTGATCTCTCTGCCAEST: gi|124712921|gb|EH804323.1|EH804323
genomic: TGTTGGTAGTGGTGGAGAAAAACTGCTTCCTGAATCCTACAAGCAGAAAGgtaatgaact ... gtgtttgtagGAATTGAGTTGATACTAAGCACAGAAATAGTGAAAGCTGATCTCTCTGCCA
EST: TGTTGGTAGTGGTGGAGAAAAACTGCTTCCTGAATCCTACAAGCAGAAAG GAATTGAGTTGATACTAAGCAEST: gi|86038377|gb|DR334132.1|DR334132
genomic: TGTTGGTAGTGGTGGAGAAAAACTGCTTCCTGAATCCTACAAGCAGAAAGgtaatgaact ... gtgtttgtagGAATTGAGTTGATACTAAGCA
EST: TGTTGGTAGTGGTGGAGAAAAACTGCTTCCTGAATCCTACAAGCAGAAAG GAATTGAGTTGATACTAAGCACAGAAATAGTGAAAGCTGATCTCTCTGCCAEST: gi|152033821|gb|BP816817.2|BP816817
genomic: TGTTGGTAGTGGTGGAGAAAAACTGCTTCCTGAATCCTACAAGCAGAAAGgtaatgaact ... gtgtttgtagGAATTGAGTTGATACTAAGCACAGAAATAGTGAAAGCTGATCTCTCTGCCA
EST: TGTTGGTAGTGGTGGAGAAAAACTGCTTCCTGAATCCTACAAGCAGAAAG GAATTGAGTTGATACTAAGCACAGAAATAGTGAAAGCTGATCTCTCTGCCAEST: gi|86038378|gb|DR334133.1|DR334133
genomic: TGTTGGTAGTGGTGGAGAAAAACTGCTTCCTGAATCCTACAAGCAGAAAGgtaatgaact ... gtgtttgtagGAATTGAGTTGATACTAAGCACAGAAATAGTGAAAGCTGATCTCTCTGCCA
EST: TGTTGGTAGTGGTGGAGAAAAACTGCTTCCTGAATCCTACAAGCAGAAAG GAATTGAGTTGATACTAAGCACAGAAATAGTGAAAGCTGATCTCTCTGCCAEST: gi|86038374|gb|DR334129.1|DR334129
genomic: TGTTGGTAGTGGTGGAGAAAAACTGCTTCCTGAATCCTACAAGCAGAAAGgtaatgaact ... gtgtttgtagGAATTGAGTTGATACTAAGCACAGAAATAGTGAAAGCTGATCTCTCTGCCA
EST: TGTTGGTAGTGGTGGAGAAAAACTGCTTCCTGAATCCTACAAGCAGAAAG GAATTGAGTTGATACTAAGCACAGAAATAGTGAAAGCTGATCTCTCTGCCAEST: gi|86038367|gb|DR334122.1|DR334122
genomic: TGTTGGTAGTGGTGGAGAAAAACTGCTTCCTGAATCCTACAAGCAGAAAGgtaatgaact ... gtgtttgtagGAATTGAGTTGATACTAAGCACAGAAATAGTGAAAGCTGATCTCTCTGCCA
EST: TGTTGGTAGTGGTGGAGAAAAACTGCTTCCTGAATCCTACAAGCAGAAAG GAATTGAGTTGATACTAAGCACAGAAATAGGGAAAGCTGATCTCTCTGCCAEST: gi|86038380|gb|DR334135.1|DR334135
genomic: TGTTGGTAGTGGTGGAGAAAAACTGCTTCCTGAATCCTACAAGCAGAAAGgtaatgaact ... gtgtttgtagGAATTGAGTTGATACTAAGCACAGAAATAGTGAAAGCTGATCTCTCTGCCA
EST: TGTTGGTAGTGGTGGAGAAAAACTGCTTCCTGAATCCTACAAGCAGAAAG GAATTGAGTTGATACTAAGCACAGAAATAGTGAAAGCTGATCTCTCTGCCAEST: gi|86038376|gb|DR334131.1|DR334131
genomic: TGTTGGTAGTGGTGGAGAAAAACTGCTTCCTGAATCCTACAAGCAGAAAGgtaatgaact ... gtgtttgtagGAATTGAGTTGATACTAAGCACAGAAATAGTGAAAGCTGATCTCTCTGCCA
EST: TGTTGGTAGTGGTGGAGAAAAACTGCTTCCTGAATCCTACAAGCAGAAAG GAATTGAGTTGATACTAAGCACAGGAATAGTGAAAGCTGATCTCTCTGCCAEST: gi|86038356|gb|DR334111.1|DR334111
genomic: TGTTGGTAGTGGTGGAGAAAAACTGCTTCCTGAATCCTACAAGCAGAAAGgtaatgaact ... gtgtttgtagGAATTGAGTTGATACTAAGCACAGAAATAGTGAAAGCTGATCTCTCTGCCA
EST: TGTTGGTAGTGGTGGAGAAAAACTGCTTCCTGAATCCTACAAGCAGAAAG GAATTGAGTTGATACTAAGCACAGAAATAGTGAAAGCTGATCTCTCTGCCAEST: gi|86038354|gb|DR334109.1|DR334109
genomic: TGTTGGTAGTGGTGGAGAAAAACTGCTTCCTGAATCCTACAAGCAGAAAGgtaatgaact ... gtgtttgtagGAATTGAGTTGATACTAAGCACAGAAATAGTGAAAGCTGATCTCTCTGCCA
EST: TGTTGGTAGTGGTGGAGAAAAACTGCTTCCTGAATCCTACAAGCAGAAAG GAATTGAGTTGATACTAAGCACAGAAATAGTGAAAGCTGATCTCTCTGCCAEST: gi|86038381|gb|DR334136.1|DR334136
genomic: TGTTGGTAGTGGTGGAGAAAAACTGCTTCCTGAATCCTACAAGCAGAAAGgtaatgaact ... gtgtttgtagGAATTGAGTTGATACTAAGCACAGAAATAGTGAAAGCTGATCTCTCTGCCA
EST: TGTTGGTAGTGGTGGAGAAAAACTGCTTCCTGAATCCTACAAGCAGAAAG GAATTGAGTTGATACTAAGCACAGAAATAGTGAAAGCTGATCTCTCTGCCAEST: gi|86038383|gb|DR334138.1|DR334138
genomic: TGTTGGTAGTGGTGGAGAAAAACTGCTTCCTGAATCCTACAAGCAGAAAGgtaatgaact ... gtgtttgtagGAATTGAGTTGATACTAAGCACAGAAATAGTGAAAGCTGATCTCTCTGCCA
EST: TGTTGGTAGTGGTGGAGAAAAACTGCTTCCTGAATCCTACAAGCAGAAAG GAATTGAGTTGATACTAAGCACAGAAATAGTGAAAGCTGATCTCTCTGCCAEST: gi|86038357|gb|DR334112.1|DR334112
genomic: TGTTGGTAGTGGTGGAGAAAAACTGCTTCCTGAATCCTACAAGCAGAAAGgtaatgaact ... gtgtttgtagGAATTGAGTTGATACTAAGCACAGAAATAGTGAAAGCTGATCTCTCTGCCA
EST: TGTTGGCAGTGGTGGAGAAAAACTGCTTCCTGAATCCTACAAGCAGAAAG GAATTGAGTTGATACTAAGCACAGAAATAGAGAAAGCTGATCTCTCTGCCAEST: gi|86038369|gb|DR334124.1|DR334124
genomic: TGTTGGTAGTGGTGGAGAAAAACTGCTTCCTGAATCCTACAAGCAGAAAGgtaatgaact ... gtgtttgtagGAATTGAGTTGATACTAAGCACAGAAATAGTGAAAGCTGATCTCTCTGCCA
EST: TGTTGGTAGTGGTGGAGAAAAACTGCTTCCTGAATCCTACAAGCAGAAAG GAATTGAGTTGATACTAAGCACAGAAATAGTGAAAGCTGATCTCTCTGCCAEST: gi|86038361|gb|DR334116.1|DR334116
genomic: TGTTGGTAGTGGTGGAGAAAAACTGCTTCCTGAATCCTACAAGCAGAAAGgtaatgaact ... gtgtttgtagGAATTGAGTTGATACTAAGCACAGAAATAGTGAAAGCTGATCTCTCTGCCA
EST: TGTTGGTAGTGGTGGAGAAAAACTGCTTCCTGAATCCTACAAGCAGAAAG GAATTGAGTKGATACTAAGCACAGAAATAGTGAAAGCTGATCTCTCTGCCAEST: gi|86038362|gb|DR334117.1|DR334117
genomic: TGTTGGTAGTGGTGGAGAAAAACTGCTTCCTGAATCCTACAAGCAGAAAGgtaatgaact ... gtgtttgtagGAATTGAGTTGATACTAAGCACAGAAATAGTGAAAGCTGATCTCTCTGCCA
EST: TGTTGGTAGTGGTGGAGAAAAACTGCTTCCTGAATCCTACAAGCAGAAAG GAATTGAGTTGATACTAAGCACAGAAATAGTGAAAGCTGATCTCTCTGCCAEST: gi|86038382|gb|DR334137.1|DR334137
genomic: TGTTGGTAGTGGTGGAGAAAAACTGCTTCCTGAATCCTACAAGCAGAAAGgtaatgaact ... gtgtttgtagGAATTGAGTTGATACTAAGCACAGAAATAGTGAAAGCTGATCTCTCTGCCA
EST: TGTTGGTAGTGGTGGAGAAAAACTGCTTCCTGAATCCTACAAGCAGAAAG GAATTGAGTTGATACTAAGCACAGAAATAGTGAAAGCTGATCTCTCTGCCAEST: gi|301501396|gb|HO206936.1|HO206936
genomic: TGTTGGTAGTGGTGGAGAAAAACTGCTTCCTGAATCCTACAAGCAGAAAGgtaatgaact ... gtgtttgtagGAATTGAGTTGATACTAAGCACAGAAATAGTGAAAGCTGATCTCTCTGCCA
EST: TGTTGGTAGTGGTGGAGAAAAACTGCTTCCTGAATCCTACAAGCAGAAAG GAATTGAGTTGATACTAAGCACAGAAATAGTGAAAGCTGATCTCTCTGCCAEST: gi|86038375|gb|DR334130.1|DR334130
genomic: TGTTGGTAGTGGTGGAGAAAAACTGCTTCCTGAATCCTACAAGCAGAAAGgtaatgaact ... gtgtttgtagGAATTGAGTTGATACTAAGCACAGAAATAGTGAAAGCTGATCTCTCTGCCA
EST: TGTTGGTAGTGGTGGAGAAAAACTGCTTCCTGAATCCTACAAGCAGAAAG GAATTGAGTTGATACTAAGCACAGAAATAGTGAAAGCTGATCTCTSTGCCA
genomic: TGTTGGTAGTGGTGGAGAAAAACTGCTTCCTGAATCCTACAAGCAGAAAGgtaatgaact ... gtgtttgtagGAATTGAGTTGATACTAAGCACAGAAATAGTGAAAGCTGATCTCTCTGCCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGGCTGCTAGACTTCCAGGTTTCCATTGCTGTGTTGGTAGTGGTGGAGAAAAACTGCTTCCTGAATCCTACAAGCAGAAAGgtaatgaactgtctgcaacatcaccaatatcaatgccctgctcatctgtgtagtcccactgatctattataacattacattactctctatacaagcttaattacttatgttattggaactaaatcgtgctatgatttttttgttatccattgtgtttgtag
- - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - GGAGAA