1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
GATGATTTTGAAATCCAGCTACAGAAGAAATTGGAGCAGGCTGATTTAGTTTCTTGTTGGCGCCATCTCCAGgtttgagattttgtcgtttgttttctccgaaaaatgtagcatagcaaggatgtgatggtctaaaatcttctttatgtag
species | Arabidopsis thaliana |
transcript | AT3G52210.2 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: AGAAGAAATTGGAGCAGGCTGATTTAGTTTCTTGTTGGCGCCATCTCCAG TTAAGCTTTGAAACTGAGGAGAGTGCGAGAAGACTCCTAACTAATGTAGCAEST: gi|86072178|gb|DR367935.1|DR367935
genomic: AGAAGAAATTGGAGCAGGCTGATTTAGTTTCTTGTTGGCGCCATCTCCAGgtttgagatt ... ctttatgtagTTATGCTTTGAAACTGAGGAGAGTGCGAGAAGACTCCTAACTAATGTAGCA
EST: AGAAGAAATTGGAGCAGGCTGATTTAGTTTCTTGTTGGCGCCATCTCCAG TTATGCTTTGAAACTGAGGAGAGTGCGAGAAGACTCCTAACTAATGTAGCA
genomic: AGAAGAAATTGGAGCAGGCTGATTTAGTTTCTTGTTGGCGCCATCTCCAGgtttgagatt ... ctttatgtagTTATGCTTTGAAACTGAGGAGAGTGCGAGAAGACTCCTAACTAATGTAGCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GATGATTTTGAAATCCAGCTACAGAAGAAATTGGAGCAGGCTGATTTAGTTTCTTGTTGGCGCCATCTCCAGgtttgagattttgtcgtttgttttctccgaaaaatgtagcatagcaaggatgtgatggtctaaaatcttctttatgtag
- - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - GCTGAT