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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTCTAACTTACAGGCACGAGTTAGGAATGAACTACAACTTTATTCGTCCAGATCTAATTGTTGGATCCTGCTTACAGgttcacttttatatccttctctcaaatgatgattttgttttggatatgtggtactttcctcgtgttcttactgtatgctctcctttattgctag

Basic information

species Arabidopsis thaliana
transcript AT3G52180.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G52180.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: Vv00s0250g00020.t01 (Vitis vinifera), 5'ss of exon 5
TTCTAACTTACAGGCACGAGTTAGGAATGAACTACAACTTTATTCGTCCAGATCTAATTGTTGGATCCTGCTTACAGgt--tcacttttatatccttctctcaaatgatgattttgttttggatatgtgg--tactttcctcgtgttcttactgtatgctctcctttattgctag
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TATTGACTTATAGGCATGAGCTAGGAATGAATTACAACTTCATTCGTCCAGACTTGATTGTGGGGTCTTGCCTACAGgtgataccatttctactctttaattaggagaagtttttttcctttctaagaagatcatttgatttttgtttttcctccaaatggcag-----------