1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
TTCTAGGAAGAATTTCACTTCCCTTTTGGATTCTGGCTACAGTTGTGTTCTTGTACCTGGTGGTGTGCAGGAGACTTTTCATATGCAACATGATGCTGAGgtagctttattgtagctcaattagtagcattcacttttgctttcatgaaatcattttcttatgagggatttggattacttagaaagcttcaagatttccg...
species | Arabidopsis thaliana |
transcript | AT3G51520.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: TTTCATATGCAACATGATGCTGAG AATGTCTTCCTTTCAAGGAGAAGAGGATTTGTGCGCATAGCCATGGAACAGEST: gi|86080043|gb|DR375800.1|DR375800
genomic: TTTCATATGCAACATGATGCTGAGgtagctttat ... cacattgcagAATGTCTTCCTTTCAAGGAGAAGAGGATTTGTGCGCATAGCCATGGAACAG
EST: TCATATGCAACATGATGCTGAG AATGTCTTCCTTTCAAGGAGAAGAGGATTTGTGCGCATAGCCATGGAACAGEST: gi|116424222|gb|EG466814.1|EG466814
genomic: TCATATGCAACATGATGCTGAGgtagctttat ... cacattgcagAATGTCTTCCTTTCAAGGAGAAGAGGATTTGTGCGCATAGCCATGGAACAG
EST: TTGTACCTGGTGGTGTGCAGGAGACTTTTCATATGCAACATGATGCTGAG AATGTCTTCCTTTCAAGGAGAAGAGGATTTGTGCGCATAGCCATGGAACAG
genomic: TTGTACCTGGTGGTGTGCAGGAGACTTTTCATATGCAACATGATGCTGAGgtagctttat ... cacattgcagAATGTCTTCCTTTCAAGGAGAAGAGGATTTGTGCGCATAGCCATGGAACAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTCTAGGAAGAATTTCACTTCCCTTTTGGATTCTGGCTACAGTTGTGTTCTTGTACCTGGTGGTGTGCAGGAGACTTTTCATATGCAACATGATGCTGAGgtagctttattgtagctcaattagtagcattcacttttgctttcatgaaatcattttcttatgagggatttggattacttagaaagcttcaagatttccg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG