1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
GACTCGCGGCTTGTATACAAGCATTATGCTACACTCTATTTTGTTCTTGTATTTGATGGTTCAGAAAATGAGCTTGCTATGCTTGATCTCATTCAAGgtccgtttttaatcactatggttcttagattgcaatataatctgaaatggcatggtgtaaaacctttttccattttcaatttttgtgctttggaatgaga...
species | Arabidopsis thaliana |
transcript | AT3G50860.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: TGATGGTTCAGAAAATGAGCTTGCTATGCTTGATCCTCATTTAAG TTCTTGTTGAAACACTGGACAAATGCTTCAGCAATGTCTGCGAACTCGACAEST: gi|163985223|gb|ES030590.1|ES030590
genomic: TGATGGTTCAGAAAATGAGCTTGCTATGCTTGAT-CTCATTCAAGgtccgttttt ... gcattggcagTTCTTGTTGAAACACTGGACAAATGCTTCAGCAATGTCTGCGAACTCGACA
EST: GATGGTTCNGAAAATGAGCTTGCTATGCTTGATCTCATTCAAG TTCTTGTTGAAACACTGGACAAATGCTTCAGCAATGTCTGCGAACTC
genomic: GATGGTTCAGAAAATGAGCTTGCTATGCTTGATCTCATTCAAGgtccgttttt ... gcattggcagTTCTTGTTGAAACACTGGACAAATGCTTCAGCAATGTCTGCGAACTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GACTCGCGGCTTGTATACAAGCATTATGCTACACTCTATTTTGTTCTTGTATTTGATGGTTCAGAAAATGAGCTTGCTATGCTTGATCTCATTCAAGgtccgtttttaatcactatggttcttagattgcaatataatctgaaatggcatggtgtaaaacctttttccattttcaatttttgtgctttggaatgaga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT