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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAAGAACCGATCTTTGGAGGGTCTTCAAACAAATGTCCAGAGGCTGAAAACCTACAAGACCAAGTTAGTCATTTTCCCGCGTCGTGCCCGCAAGGTCAAGgtaatcattataaacaattggtctatggttcagttgtttaatgaattgttggatttggtactgatttcgtacttgttctgttttcgtttgtgtgttag

Basic information

species Arabidopsis thaliana
transcript AT3G49010.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G49010.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: LOC_Os06g02510.3 (Oryza sativa), 5'ss of exon 4
CAAGAACCGATCTTTGGAGGGTCTTCAAACAAATGTCCAGAGGCTGAAAACCTACAAGACCAAGTTAGTCATTTTCCCGCGTCGTGCCCGCAAGGTCAAGgtaatcattataaacaattggtctatggttcagttgtttaatgaattgttggatttggtactgatttcgtacttgttctgttttcgtttgtgtgttag
 |||||||| ||  | || ||||| ||  | ||||||||||||||||| ||||||||| ||||| | ||||| |||||  | |||||||||||||||||||| |           | ||   |      | ||   |  | | ||        ||  | |  |||  | ||| |   |    | | || |        
TAAGAACCGCTCACTTGAAGGTCTGCAGGCCAATGTCCAGAGGCTGAAGACCTACAAGGCCAAGCTTGTCATCTTCCCAAGACGTGCCCGCAAGGTCAAGgtga-------gggaactttacccgc--cttagccttacacttaaacccactgttctgaa--gatcccttacattaaccaactcctttcgcag-----

upper sequence: AT3G49010.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA09G34760.2 (Glycine max), 5'ss of exon 4
------CAAGAACCGATCTTTGGAGGGTCTTCAAACAAATGTCCAGAGGCTGAAAACCTACAAGACCAAGTTAGTCATTTTCCCGCGTCGTGCCCGCAAGGTCAAGgtaatcattataaacaattggtctatggttcagttgtttaatgaattgttggatttggtactgatttcgtacttgttctgttttcgt-ttgtgtgttag----------------
      ||||||||| ||||||||  |||| ||| | ||||| |||||||||||||| |||||| |||| || ||  | |||||  | || || | |||||| ||||||||    ||   | |||  |||||  ||   ||||   | | ||| |    | || |   | ||    |       |||||  || |  ||||  |                 
TCGTCGCAAGAACCGTTCTTTGGAAAGTCTGCAAGCTAATGTGCAGAGGCTGAAAACATACAAGGCCAAATTGGTTGTGTTCCCAAGACGGGCACACAAGgttaaggtaattcagatgttccatta-tctat--tttgattgtggtaggcattttcatttctgatgaaggttgaa-atgaaagatgtttgtgtgtcatgtgacactgttgttttattgtag

upper sequence: AT3G49010.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA04G14640.2 (Glycine max), 5'ss of exon 4
CAAGAACCGATCTTTGGAGGGTCTTCAAACAAATGTCCAGAGGCTGAAAACCTACAAGACCAAGTTAGTCATTTTCCCGCGTCGTGCCCGCAAGGTCAAGgtaatcattataaacaattggtctatggttcagttgtttaatgaat-tgttggatttggtactg--atttc--gtacttgtt-----ctgttttcgtttgtgtgttag---------------------
||||||||| ||||||||  |||| ||| | ||||| |||||||||||||| |||||| |||| || ||  | |||||  | || || |  ||||| ||||||||    ||   |||||    | || ||   |||| |    | | | ||   |||| ||     |||||  ||    | |         |   |||||||||  |                      
CAAGAACCGTTCTTTGGAAAGTCTGCAAGCTAATGTGCAGAGGCTGAAAACATACAAGGCCAAATTGGTTGTGTTCCCAAGACGGGCACAGAAGGTTAAGgtaatacagatgttcaatta---tctgttttgattgtgtgggcattgtcttaattttgatatcatcatttctggtgaaaggtaaaaaggaatgatgtttgtgtgaaatctgactgttgttttattgtag

upper sequence: AT3G49010.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA09G34760.3 (Glycine max), 5'ss of exon 5
CAAGAACCGATCTTTGGAGGGTCTTCAAACAAATGTCCAGAGGCTGAAAACCTACAAGACCAAGTTAGTCATTTTCCCGCGTCGTGCCCGCAAGGTCAAGgtaatcattataaacaattggtctatggttcagttgtttaatgaattgttggatttggtactgatttcgtacttgttctgttttcgt-ttgtgtgttag----------------
||||||||| ||||||||  |||| ||| | ||||| |||||||||||||| |||||| |||| || ||  | |||||  | || || | |||||| ||||||||    ||   | |||  |||||  ||   ||||   | | ||| |    | || |   | ||    |       |||||  || |  ||||  |                 
CAAGAACCGTTCTTTGGAAAGTCTGCAAGCTAATGTGCAGAGGCTGAAAACATACAAGGCCAAATTGGTTGTGTTCCCAAGACGGGCACACAAGGTTAAGgtaattcagatgttccatta-tctat--tttgattgtggtaggcattttcatttctgatgaaggttgaa-atgaaagatgtttgtgtgtcatgtgacactgttgttttattgtag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86076156|gb|DR371913.1|DR371913
EST:     CCTACAAGACCAAGTTAGTCATTTTCCCGCGTCGTGCCCGCAAGGTCAAG                         GCTGGTGACTCTACACCAGAAGAGTTGGCTAATGCTACCCAAGTTCAAGGA
genomic: CCTACAAGACCAAGTTAGTCATTTTCCCGCGTCGTGCCCGCAAGGTCAAGgtaatcatta ... tgtgtgttagGCTGGTGACTCTACACCAGAAGAGTTGGCTAATGCTACCCAAGTTCAAGGA
EST: gi|125031776|gb|EL104045.1|EL104045
EST:     TACAAGACCAAGTTAGTCATTTTCCCGCGTCGTTGCCCGACAAGGTCAAG                         GCTGGTGACTCTACACCAGAAGAGTTGGCTAATGCTACCCAAGTTCAAGGA
genomic: TACAAGACCAAGTTAGTCATTTTCCCGCGTCG-TGCCCG-CAAGGTCAAGgtaatcatta ... tgtgtgttagGCTGGTGACTCTACACCAGAAGAGTTGGCTAATGCTACCCAAGTTCAAGGA
EST: gi|164182477|gb|ES018246.1|ES018246
EST:     CGTCGTGCCCGCAAGGTCAAG                         GCTGGTGACTCTACACCAGAAGAGTTGGCTAATGCTACCCAAGTTCAAGGA
genomic: CGTCGTGCCCGCAAGGTCAAGgtaatcatta ... tgtgtgttagGCTGGTGACTCTACACCAGAAGAGTTGGCTAATGCTACCCAAGTTCAAGGA
EST: gi|86085358|gb|DR381117.1|DR381117
EST:     CCTACAAGACCAAGTTAGTCATTTTCCCGCGTCGTGCCCGCAAGGTCAAG                         GCTGGTGACTCTACACCAGAAGAGTTGGCTAATGCTACCCAAGTTCAAGGA
genomic: CCTACAAGACCAAGTTAGTCATTTTCCCGCGTCGTGCCCGCAAGGTCAAGgtaatcatta ... tgtgtgttagGCTGGTGACTCTACACCAGAAGAGTTGGCTAATGCTACCCAAGTTCAAGGA
EST: gi|116471273|gb|EG513865.1|EG513865
EST:     CCTACAAGACCGAGTTAGTCATTTTCCCGCGTCGTGCCCGCAAGGTCAAG                         GCTGGTGACTCTACACCAGAAGAGTTGGCTAATGCTACCCAAGTTCAAGGA
genomic: CCTACAAGACCAAGTTAGTCATTTTCCCGCGTCGTGCCCGCAAGGTCAAGgtaatcatta ... tgtgtgttagGCTGGTGACTCTACACCAGAAGAGTTGGCTAATGCTACCCAAGTTCAAGGA
EST: gi|47829477|gb|CK119161.1|CK119161
EST:     CCTACAAGACCAAGTTAGTCATTTTCCCGCGTCGTGCCCGCAAGGTCAAG                         GCTGGTGACTCTACACCAGAAGAGTTGGCTAATGCTACCCAAGTTCAAGGA
genomic: CCTACAAGACCAAGTTAGTCATTTTCCCGCGTCGTGCCCGCAAGGTCAAGgtaatcatta ... tgtgtgttagGCTGGTGACTCTACACCAGAAGAGTTGGCTAATGCTACCCAAGTTCAAGGA
EST: gi|124993436|gb|EL065705.1|EL065705
EST:     CCCGCGTCGTGCCCGCAAGGTCAAG                         GCTGGTGACTCTACACCAGAAGAGTTGGCTAATGCTACCCAAGTTCAAGGA
genomic: CCCGCGTCGTGCCCGCAAGGTCAAGgtaatcatta ... tgtgtgttagGCTGGTGACTCTACACCAGAAGAGTTGGCTAATGCTACCCAAGTTCAAGGA
EST: gi|86018573|gb|DR314319.1|DR314319
EST:     CCTACAAGACCAAGTTAGTCATTTTCCCGCGTCGTGCCCGCAAGGTCAAG                         GCTGGTGACTCTACACCAGAAGAGTTGGCTAATGCTACC-AAGTTCAAGGA
genomic: CCTACAAGACCAAGTTAGTCATTTTCCCGCGTCGTGCCCGCAAGGTCAAGgtaatcatta ... tgtgtgttagGCTGGTGACTCTACACCAGAAGAGTTGGCTAATGCTACCCAAGTTCAAGGA
EST: gi|164222836|gb|ES042185.1|ES042185
EST:     CCTACAAGACCAAGTTAGTCATTT-CCCGCGTCGTGCCCGCAAGGTCAAG                         GCTGGTGACTCTACACCAGAAGAGTTGG
genomic: CCTACAAGACCAAGTTAGTCATTTTCCCGCGTCGTGCCCGCAAGGTCAAGgtaatcatta ... tgtgtgttagGCTGGTGACTCTACACCAGAAGAGTTGG
EST: gi|125028276|gb|EL100545.1|EL100545
EST:     CCTACAAGACCAAGTTAGTCATCTTCCCGCGTCGTGCCCGCAAGGTCAAG                         GCTGGTGACTCTACACCAGAAGAGTT
genomic: CCTACAAGACCAAGTTAGTCATTTTCCCGCGTCGTGCCCGCAAGGTCAAGgtaatcatta ... tgtgtgttagGCTGGTGACTCTACACCAGAAGAGTT
EST: gi|164057454|gb|ES153098.1|ES153098
EST:     GTGCCCGCAAGGTCAAG                         GCTGGTGACTCTACACCAGAAGAGTTGGCTAATGCTACCCAAGTTCAAGGA
genomic: GTGCCCGCAAGGTCAAGgtaatcatta ... tgtgtgttagGCTGGTGACTCTACACCAGAAGAGTTGGCTAATGCTACCCAAGTTCAAGGA
EST: gi|86074296|gb|DR370053.1|DR370053
EST:     CCTACAAGACCAAGTTAGTCATTTTCCCGCGTCGTGCCCGCAAGGTCAAG                         GCTGGTGACTCTACACCAGAAGAGTTGGCTAATGCTACCCAAGTTCAAGGA
genomic: CCTACAAGACCAAGTTAGTCATTTTCCCGCGTCGTGCCCGCAAGGTCAAGgtaatcatta ... tgtgtgttagGCTGGTGACTCTACACCAGAAGAGTTGGCTAATGCTACCCAAGTTCAAGGA
EST: gi|164014387|gb|ES056673.1|ES056673
EST:     CCTACAAGACCAAGTTAGTCATTTTCCCGCGTCGTGCCCGCAAGGTCAAG                         GCTGGTGACTCTACACCAGAAGAGTTGGCTAATGCTACCCAAGTTCAAGG
genomic: CCTACAAGACCAAGTTAGTCATTTTCCCGCGTCGTGCCCGCAAGGTCAAGgtaatcatta ... tgtgtgttagGCTGGTGACTCTACACCAGAAGAGTTGGCTAATGCTACCCAAGTTCAAGG
EST: gi|164034410|gb|ES197174.1|ES197174
EST:     TACAAGACCAAGTTAGTCATTTTCCCGCGTCGTGCCCGCAAGGTAACAAG                         GCTGGTGACTCTACACCAGAAGAGTTGGCTAATGCTACCC
genomic: TACAAGACCAAGTTAGTCATTTTCCCGCGTCGTGCCCGCAAGGT--CAAGgtaatcatta ... tgtgtgttagGCTGGTGACTCTACACCAGAAGAGTTGGCTAATGCTACCC
EST: gi|164187663|gb|ES195467.1|ES195467
EST:     CCTACAAGACCAAGTTAGTCATTTTCCCGCGTCGTGCCCGCAAGGTCAAG                         GCTGGTGACTCTACACCAGAAGAGTTGGCTAATGCTACCC
genomic: CCTACAAGACCAAGTTAGTCATTTTCCCGCGTCGTGCCCGCAAGGTCAAGgtaatcatta ... tgtgtgttagGCTGGTGACTCTACACCAGAAGAGTTGGCTAATGCTACCC
EST: gi|124959490|gb|EL034194.1|EL034194
EST:     CCTACAAGACCAAGTTAGTCATTTTCCCGCGTCGTGCCCGCAAGGTCAAG                         GCTGGTGACTCTACACCAGAAGAGTTGGCTAATGCCTACCCAAGTTCAA
genomic: CCTACAAGACCAAGTTAGTCATTTTCCCGCGTCGTGCCCGCAAGGTCAAGgtaatcatta ... tgtgtgttagGCTGGTGACTCTACACCAGAAGAGTTGGCTAATGC-TACCCAAGTTCAA
EST: gi|163981564|gb|ES029114.1|ES029114
EST:     CCTACAAGACCAAGTTAGTCATTT-CCCGCGTCGTGCCCGCAAGGTCAAG                         GCTGGTGACTCTACACCAGAAGAGTT
genomic: CCTACAAGACCAAGTTAGTCATTTTCCCGCGTCGTGCCCGCAAGGTCAAGgtaatcatta ... tgtgtgttagGCTGGTGACTCTACACCAGAAGAGTT
EST: gi|86018575|gb|DR314321.1|DR314321
EST:     CCTACAAGACCAAGTTAGTCATTTTCCCGCGTCGTGCCCGCAAGGTCAAG                         GCTGGTGACTCTACACCAGAAGAGTTGGCTAATGCTACCCAAGTTCAAGGA
genomic: CCTACAAGACCAAGTTAGTCATTTTCCCGCGTCGTGCCCGCAAGGTCAAGgtaatcatta ... tgtgtgttagGCTGGTGACTCTACACCAGAAGAGTTGGCTAATGCTACCCAAGTTCAAGGA
EST: gi|164105591|gb|ES012898.1|ES012898
EST:     CCTACAAGACCAAGTTAGTCATTTTCCCGCGTCGTGCCCGCAAGGTCAAG                         GCTGGTGACTCTACACC
genomic: CCTACAAGACCAAGTTAGTCATTTTCCCGCGTCGTGCCCGCAAGGTCAAGgtaatcatta ... tgtgtgttagGCTGGTGACTCTACACC
EST: gi|164197245|gb|ES094321.1|ES094321
EST:     TTTTCCCGCGTCGTGCCCGCAAGATCAAG                         GCTGGTGACTCTACACCAGAAGAGTTGGCTAATGCTACCCAAGTTCAAGGA
genomic: TTTTCCCGCGTCGTGCCCGCAAGGTCAAGgtaatcatta ... tgtgtgttagGCTGGTGACTCTACACCAGAAGAGTTGGCTAATGCTACCCAAGTTCAAGGA
EST: gi|164201644|gb|ES171439.1|ES171439
EST:     CCTACAAGACCAAGTTAGTCATTTTCCCGCGTCGTGCCCGCAAGGTCAAG                         GCTGGTGAACTCTACACCAGAAGAGTTGGCTAATGC
genomic: CCTACAAGACCAAGTTAGTCATTTTCCCGCGTCGTGCCCGCAAGGTCAAGgtaatcatta ... tgtgtgttagGCTGGTGA-CTCTACACCAGAAGAGTTGGCTAATGC
EST: gi|164218854|gb|ES190080.1|ES190080
EST:     CCCGCGTCGTGCCCGCAAGGTCAAG                         GCTGGTGACTCTACACCAGAAGAGTTGGCTAATGCTACCCAAGTTCAAGGA
genomic: CCCGCGTCGTGCCCGCAAGGTCAAGgtaatcatta ... tgtgtgttagGCTGGTGACTCTACACCAGAAGAGTTGGCTAATGCTACCCAAGTTCAAGGA
EST: gi|163968033|gb|ES166146.1|ES166146
EST:     CTACAAGACCAAGTTAGTCTATTTTCCCGCGTCGTGCCCGCAAGGTCAAG                         GCTGGTGACTCTACACCAGAAGAGTTGGCTAATGCTACCCAAGTTC
genomic: CTACAAGACCAAGTTAGTC-ATTTTCCCGCGTCGTGCCCGCAAGGTCAAGgtaatcatta ... tgtgtgttagGCTGGTGACTCTACACCAGAAGAGTTGGCTAATGCTACCCAAGTTC
EST: gi|86074609|gb|DR370366.1|DR370366
EST:     CCTACAAGACCAAGTTAGTCATTTTCCCGCGTCGTGCCCGCAAGGTCAAG                         GCTGGTGACTCTACACCAGAAGAGTTGGCTAATGCTACCCAAGTTCAAGGA
genomic: CCTACAAGACCAAGTTAGTCATTTTCCCGCGTCGTGCCCGCAAGGTCAAGgtaatcatta ... tgtgtgttagGCTGGTGACTCTACACCAGAAGAGTTGGCTAATGCTACCCAAGTTCAAGGA
EST: gi|163969160|gb|ES014874.1|ES014874
EST:     CCTACAAGACCAAGTTAGTCATTTTCCCGCGTCGTGCCCGCAAGGTCAAG                         GCTGGTGACTCTACACCAGAAGAGTTGGCTAATGCTACCCAAG
genomic: CCTACAAGACCAAGTTAGTCATTTTCCCGCGTCGTGCCCGCAAGGTCAAGgtaatcatta ... tgtgtgttagGCTGGTGACTCTACACCAGAAGAGTTGGCTAATGCTACCCAAG
EST: gi|125000894|gb|EL073163.1|EL073163
EST:     CCTACAAGACTAAGTTAGTCATTTTCCCGCGTCGTGCCCGCAAGGTCAAG                         GCTGGTGACTCTACACCAGAAGAGTTGGCTAATGCTACCCAA
genomic: CCTACAAGACCAAGTTAGTCATTTTCCCGCGTCGTGCCCGCAAGGTCAAGgtaatcatta ... tgtgtgttagGCTGGTGACTCTACACCAGAAGAGTTGGCTAATGCTACCCAA
EST: gi|47831958|gb|CK121642.1|CK121642
EST:     CCTACAAGACCAAGTTAGTCATTTTCCCGCGTCGTGCCCGCAAGGTCAAG                         GCTGGTGACTCTACACCAGAAGAGTTGGCTAATGCTACCCAAGTTCAAGGA
genomic: CCTACAAGACCAAGTTAGTCATTTTCCCGCGTCGTGCCCGCAAGGTCAAGgtaatcatta ... tgtgtgttagGCTGGTGACTCTACACCAGAAGAGTTGGCTAATGCTACCCAAGTTCAAGGA
EST: gi|164152426|gb|ES008790.1|ES008790
EST:     GTGCCCGCAAGGTCAAG                         GCTGGTGACTCTACACCAGAAGAGTTGGCTAATG
genomic: GTGCCCGCAAGGTCAAGgtaatcatta ... tgtgtgttagGCTGGTGACTCTACACCAGAAGAGTTGGCTAATG
EST: gi|163971858|gb|ES148330.1|ES148330
EST:     CCTACAAGACCAAGTTAGTCATTTTCCCGCGTCGTGCCCGCAAGGTCAAG                         GCTGGTGACTCTACACCAGAAGAGTTGGCTAATGCTACCC
genomic: CCTACAAGACCAAGTTAGTCATTTTCCCGCGTCGTGCCCGCAAGGTCAAGgtaatcatta ... tgtgtgttagGCTGGTGACTCTACACCAGAAGAGTTGGCTAATGCTACCC
EST: gi|124824472|gb|EH909338.1|EH909338
EST:     GTCGTGCCCGCAAGGTCAAG                         GCTGGTGACTCTACACCAGAAGAGTTGGTTAATGCTACCCAAGTTCAAGGA
genomic: GTCGTGCCCGCAAGGTCAAGgtaatcatta ... tgtgtgttagGCTGGTGACTCTACACCAGAAGAGTTGGCTAATGCTACCCAAGTTCAAGGA
EST: gi|125150914|gb|EL183317.1|EL183317
EST:     CCTACAAGACCAAGTTAGTCATTTTCCCGCGTCGTGCCCGCAAGGTCAAG                         GCTGGTGACTCTACACCAGAAGAG
genomic: CCTACAAGACCAAGTTAGTCATTTTCCCGCGTCGTGCCCGCAAGGTCAAGgtaatcatta ... tgtgtgttagGCTGGTGACTCTACACCAGAAGAG
EST: gi|125040736|gb|EL113005.1|EL113005
EST:     CCTACAAGACCAAGTTAGTCATTTTCCCGCGTCGTGCCCGCAAGGTCAAG                         GCTGGTGACTCTACACCAGAAGAGTTGGCTAATGCTACCCAAGTT
genomic: CCTACAAGACCAAGTTAGTCATTTTCCCGCGTCGTGCCCGCAAGGTCAAGgtaatcatta ... tgtgtgttagGCTGGTGACTCTACACCAGAAGAGTTGGCTAATGCTACCCAAGTT
EST: gi|124722157|gb|EH813559.1|EH813559
EST:     CCTACAAGACCAAGTTAGTCATTTTCCCGCGTCGTGCCCGCAAGGTCAAG                         GCTGGTGACTCTACACCAGAAGAGTTGGCTAA
genomic: CCTACAAGACCAAGTTAGTCATTTTCCCGCGTCGTGCCCGCAAGGTCAAGgtaatcatta ... tgtgtgttagGCTGGTGACTCTACACCAGAAGAGTTGGCTAA