1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
GACTCCTGCTTCCATTGCACTAATAATCTACACTTTCATTTGCGTCTGGTTTGTTGGTGGGCTTACCTGTTTCCACTTGTACCTAATGAGTACCAATCAGgtaaaaatcattactctctaaaagctccttgttttgaaactgttggataatttagctacttgttaacattgtttctctgttgtttattatgttgtgatttggcag
species | Arabidopsis thaliana |
transcript | AT3G48760.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: TGTTGGTGGGCTTACCTGTTTCCACTTGTACCTAATGAGTACCAATCAAG TCAACTTACGAAAACTTTAGGTATCGGTATGATEST: gi|124826261|gb|EH911127.1|EH911127
genomic: TGTTGGTGGGCTTACCTGTTTCCACTTGTACCTAATGAGTACCAATCA-Ggtaaaaatca ... gatttggcagTCAACTTACGAAAACTTTAGGTATCGGTATGAT
EST: TTGTTGGTGGGCTTACCTGTTTCCACTTGTACCTAATGAGTACCAATCAG TCAACTTACGAAAACTTTAGGT
genomic: TTGTTGGTGGGCTTACCTGTTTCCACTTGTACCTAATGAGTACCAATCAGgtaaaaatca ... gatttggcagTCAACTTACGAAAACTTTAGGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GACTCCTGCTTCCATTGCACTAATAATCTACACTTTCATTTGCGTCTGGTTTGTTGGTGGGCTTACCTGTTTCCACTTGTACCTAATGAGTACCAATCAGgtaaaaatcattactctctaaaagctccttgttttgaaactgttggataatttagctacttgttaacattgtttctctgttgtttattatgttgtgatttggcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG