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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGCGTTTCAGAGGAGAAGAAAATGGGACAAGAGGATTGTTGAATTCCTCAACAAAACATCTGATAAACCGCTAATATGGTGTGGCGACTTAAATGTCAGgtaatgaggaagttttttctatatcttctcttgctatactcttttccttaagcccttacagaataaaagttgatgttatttcctcgattcgatttttgtaatacgcag

Basic information

species Arabidopsis thaliana
transcript AT3G48425.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G48425.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: Vv17s0000g09970.t01 (Vitis vinifera), 5'ss of exon 4
-ATGCGTTTCAGAGGAGAAGAAAATGGGACAAGAGGATTGTTGAATTCCTCAACAAAACATCTGATAAACCGCTAATATGGTGTGGCGACTTAAATGTCAGgtaatgaggaagtttttt-ctatatcttctcttgctatactctt-ttccttaagcccttacagaataaaagttgatgttatttcctcgattcgatttttgtaatacgcag
 || | ||||||||||||||||||||||| ||||||||  |||||||  |     || | |||||||| || || || |||||||||||  | ||||| ||||||  |     |||    || ||  |    || |  | || |  || | |  |      |   | |    ||  | |  ||| || | |      |||           
CAT-CATTTCAGAGGAGAAGAAAATGGGATAAGAGGATGCTTGAATTTGTTGTGCAATCTTCTGATAAGCCTCTTATTTGGTGTGGCGATCTGAATGTTAGgtaaccacttcctttcgagctttagttatctttaccttcctttagttacctgtgtttccgcttgaaatttctttctatgtttttctaggtaaatggtttc----------