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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTGGTTGATCAAGCTTTAACAAACGGAGTCAAAGTAGCTGTGTGCAGTACTTCAAATGAGAAGGCGgtatgatcaatcaggttctactacttcagtttcctgagaccataaccatatatctcaaaatcttgtatcctgatgagttttcgtaaacaagactacgcgcagctgcatcgttaacatgaatatgcgagcatcgtcttagcttagaagaactgtataatcggaaatacttttctcatttcttgcctgatttcag

Basic information

species Arabidopsis thaliana
transcript AT3G48420.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G48420.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: Vv17s0000g09910.t01 (Vitis vinifera), 5'ss of exon 4
GTTGGTTGATCAAGCTTTAACAAACGGAGTCAAAGTAGCTGTGTGCAGTACTTCAAATGAGAAGGCGgtatgatcaatcaggttctactacttcagtttcctgagaccataaccatatatctcaaaatcttgtatcctgatgagttttcgtaaacaagactacgcgcagctgcatcgttaacatgaatatgcgagcatcgtcttagcttagaagaactgtataatcggaaatacttttctcatttcttgcctgatttcag
  |  ||||||| ||||||   || || ||||| || ||||| ||||| ||||| |||||||||||||||||  |||||||||||||  | || | || |   | |    |   ||||| |     || |||      ||| |  |   | ||| |  |  |   ||   ||  |||  ||                                                                               
ACTTATTGATCAGGCTTTAGGGAAGGGGGTCAATGTTGCTGTCTGCAGCACTTCCAATGAGAAGGCGgtatgcacaatcaggttctaaaattttaattgctcaaaa---aattgatatacc-----attttgag----gataacgtgcagcaaatataaaaat-tgcttgtgt-tcggaaa-------------------------------------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86078346|gb|DR374103.1|DR374103
EST:     TAACAAACGGAGTCAAAGTAGCTGTGTGCAGTACTTCAAATGAGAAGGCG                         GTTTCTGCTATAGTTTCATGCTTGCTTGGACCAGAACGAGCAGAGAAAATC
genomic: TAACAAACGGAGTCAAAGTAGCTGTGTGCAGTACTTCAAATGAGAAGGCGgtatgatcaa ... ctgatttcagGTTTCTGCTATAGTTTCATGCTTGCTTGGACCAGAACGAGCAGAGAAAATC
EST: gi|124918778|gb|EH992586.1|EH992586
EST:     CAAAGTAGCTGTGTGCAGTACTTCAAATGAGAAGGCG                         GTTTCTGCTATAGTTTCATGCTTGCTTGGACCAGAACGAGCAGAGAAAATC
genomic: CAAAGTAGCTGTGTGCAGTACTTCAAATGAGAAGGCGgtatgatcaa ... ctgatttcagGTTTCTGCTATAGTTTCATGCTTGCTTGGACCAGAACGAGCAGAGAAAATC
EST: gi|124866887|gb|EH951324.1|EH951324
EST:     AGCTGTGTGCAGTACTTCAAATGAGAAGGCG                         GTTTCTGCTATAGTTT
genomic: AGCTGTGTGCAGTACTTCAAATGAGAAGGCGgtatgatcaa ... ctgatttcagGTTTCTGCTATAGTTT
EST: gi|125171797|gb|EL194443.1|EL194443
EST:     TAACAAACGGAGTCAAAGTAGCTGTGTGCAGTACTTCAAATGAGAAGGCG                         GTTTCTGCTATAGTTTCATGCTTGCTTGGACCAGAACGAGCAGAGAA
genomic: TAACAAACGGAGTCAAAGTAGCTGTGTGCAGTACTTCAAATGAGAAGGCGgtatgatcaa ... ctgatttcagGTTTCTGCTATAGTTTCATGCTTGCTTGGACCAGAACGAGCAGAGAA
EST: gi|125141483|gb|EL178984.1|EL178984
EST:     GCTGTGTGCAGTACTTCAAATGAGAAGGCG                         GTTTCTGCTATAGTTTCATGCTTGCTTGGACCAGAACGAGCAGAGAAAATC
genomic: GCTGTGTGCAGTACTTCAAATGAGAAGGCGgtatgatcaa ... ctgatttcagGTTTCTGCTATAGTTTCATGCTTGCTTGGACCAGAACGAGCAGAGAAAATC
EST: gi|47832151|gb|CK121835.1|CK121835
EST:     TAACAAACGGAGTCAAAGTAGCTGTGTGCAGTACTTCAAATGAGAAGGCG                         GTTTCTGCTATAGTTTCATGCTTGCTTGGACCAGAACGAGCAGAGAAAATC
genomic: TAACAAACGGAGTCAAAGTAGCTGTGTGCAGTACTTCAAATGAGAAGGCGgtatgatcaa ... ctgatttcagGTTTCTGCTATAGTTTCATGCTTGCTTGGACCAGAACGAGCAGAGAAAATC
EST: gi|124834524|gb|EH918963.1|EH918963
EST:     TAACAAACGGAGTCAAAGTAGCTGTGTGCAGTACTTCAAATGAGAAGGCG                         GTTTCTGCTATAGTTTCATGACTTGCTTGGACCAGAACGAGCAGAGAA
genomic: TAACAAACGGAGTCAAAGTAGCTGTGTGCAGTACTTCAAATGAGAAGGCGgtatgatcaa ... ctgatttcagGTTTCTGCTATAGTTTCATG-CTTGCTTGGACCAGAACGAGCAGAGAA
EST: gi|125075727|gb|EL139160.1|EL139160
EST:     TAACAAACGGAGTCAAAGTAGCTGTGTGCAGTACTTCAAATGAGAAGGCG                         GTTTCTGCTATAGTTTCATG
genomic: TAACAAACGGAGTCAAAGTAGCTGTGTGCAGTACTTCAAATGAGAAGGCGgtatgatcaa ... ctgatttcagGTTTCTGCTATAGTTTCATG