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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CACCATTCCTTTTATCCCCAAGTTGCCTTATGATGTCATAGCCACAGACTACGACAACTACGCACTTGTTTCTGGAGCCAAAGACAAGGGCTTTGTTCAGgtgattctaagagaaagaactcatgagtttgagaaatatctcttgcactgatctcttatataaacctaatgtgtttgatatgttag

Basic information

species Arabidopsis thaliana
transcript AT3G47860.1
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86083428|gb|DR379187.1|DR379187
EST:     ACGACAACTACGCACTTGTTTCTGGAGCTAAAGACAMGGGCTTTGTTCAG                         GTMTACTCAAGGACGCCAAATCCAGGACCTGAGTTCATCGCAAAGTACAAG
genomic: ACGACAACTACGCACTTGTTTCTGGAGCCAAAGACAAGGGCTTTGTTCAGgtgattctaa ... gatatgttagGTATACTCAAGGACGCCAAATCCAGGACCTGAGTTCATCGCAAAGTACAAG
EST: gi|125023454|gb|EL095723.1|EL095723
EST:     CAAAGACAAGGGCTTTGTTCAG                         GTATACTCAAGGACGCCAAATCCAGGACCTGAGTTCATCGCAAAGTACAAG
genomic: CAAAGACAAGGGCTTTGTTCAGgtgattctaa ... gatatgttagGTATACTCAAGGACGCCAAATCCAGGACCTGAGTTCATCGCAAAGTACAAG
EST: gi|125166488|gb|EL192262.1|EL192262
EST:     CGACAACTACGCACTTTGTTTCTGGAGCCAAAGACAAGGGCTTTGTTCAG                         GTATACTCAAGGACGCCAAATCCAGGACCTGAGTTCATCGCAAAG
genomic: CGACAACTACGCAC-TTGTTTCTGGAGCCAAAGACAAGGGCTTTGTTCAGgtgattctaa ... gatatgttagGTATACTCAAGGACGCCAAATCCAGGACCTGAGTTCATCGCAAAG