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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGAAGCTGCCGGAGAGTTTTCTAGAGGCGCCACTGCTTATTTAAACATGGAGCCTGGTGATTGTCATGGTGACCACACTGCTGTATCTGCTCTTGTTCAGgtttttgcttctttctcttagatttttctgtgaataagccataagccaatgattgtgtgatattaggaaacaatttgaccaaattgagattgtatagattag

Basic information

species Arabidopsis thaliana
transcript AT3G47390.2
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G47390.2 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: Vv04s0023g00680.t01 (Vitis vinifera), 5'ss of exon 1
TGAAGCTGCCGGAGAGTTTTCTAGAGGCGCCACTGCTTATTTAAACATGGAGCCTGGTGATTGTCATGGTGACCACACTGCTGTATCTGCTCTTGTTCAGgtttttgcttctttctcttagatttttctgtgaataagccataagccaatgattgtgtgatattaggaaacaatttgaccaaat-tgagattgtatagat-tag-
 || || ||||| ||||| |  |||||||||||||||||| | ||||||||||| || |||||||| |||||||  || || || |||||||||||  ||||||   ||    | |||    | | ||| |   |      | |     || |||| || | ||  ||  |  ||  |       |   |||||  || | ||| 
GGAGGCCGCCGGCGAGTTGTGCAGAGGCGCCACTGCTTATCTCAACATGGAGCCCGGCGATTGTCACGGTGACCGTACGGCGGTCTCTGCTCTTGTCAAGgtttggcctcgagtttctc---tctgtctctcttttctttttgaat--gtgtttgtttgtttttttgattcctttcaattcttcatcgcattgtgcagttctagc

upper sequence: AT3G47390.2 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: PP1S175_104V6.1 (Physcomitrella patens), 5'ss of exon 2
TGAAGCTGCCGGAGAGTTTTCTAGAGGCGCCACTGCTTATTTAAACATGGAGCCTGGTGATTGTCATGGTGACCACACTGCTGTATCTGCTCTTGTTCAGgtttttgcttctttctcttagatttttc---tgtgaataagccat---aagccaatgattgtgtgatattaggaaacaatttgaccaaattgagattgtatagattag
 |||   || |||||| |  | | |   || || |||||||||||  |||||||||| ||||||||||||||   || ||||||    ||||||   |||||     ||| |||     |   ||||    | ||||  ||  ||   | | ||  ||   |||   | |      || | | ||       | || |||        
AGAAAGAGCTGGAGAGCTCGCCAAAAATGCAACAGCTTATTTAAATTTGGAGCCTGGCGATTGTCATGGTGATGCCAGTGCTGTTCGCGCTCTTAGGCAGgtgaacacttattttgtacaacgttttgatatctgaaggagtgatcgaatggcagcgaagttgtagaagtgcttcgcagtctaacggtcccaatatggta--------