Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATGAAGATGGAAACAAGACAATAAATGAGTTTGTTCGTGAGCGTAAAATTGGATCTGGTAGTTATGGGAAAGTGgtaagtgtgaaatcaaatttcaatgttacatggtcttccggtcgctcttgagaacatcttaaataagggttgttgttttgtatgtataacag

Basic information

species Arabidopsis thaliana
transcript AT3G45240.2
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G45240.3 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA11G20690.1 (Glycine max), 5'ss of exon 3
GATGAAGATGGAAACAAGACAATAAATGAGTTTGTTCGTGAGCGTAAAATTGGATCTGGTAGTTATGGGAAAGTGgtaagtgtgaaatcaa----atttcaatg-ttacatggtcttccggtcgctcttgagaacatcttaaataagggttgttgttttgtatgtataacag
|||||| |||| |||||||  |||||||||| | |||||||| |||||||||| |||||||| |||||||||||||| |||||   ||  |    | || | || |||  |  | || | ||| |  | || ||||  ||   | ||  |  ||   ||  ||| || ||||
GATGAAAATGGGAACAAGATGATAAATGAGTATATTCGTGAGTGTAAAATTGGTTCTGGTAGCTATGGGAAAGTGgtgagtgtagtattcatggtacttaactggttaactactttttctgtctcagt-gaaaacaattttcctgagcctcttt-ccttacatgcatgacag

upper sequence: AT3G45240.3 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA12G07340.1 (Glycine max), 5'ss of exon 4
GATGAAGATGGAAACAAGACAATAAATGAGTTTGTTCGTGAGCGTAAAATTGGATCTGGTAGTTATGGGAAAGTGgtaagtgtgaaatcaaatttcaatgttacatggtcttccggtcgctcttgagaacatcttaaataagggttgttgttttgtatgtataacag
|||||| |||| |||||||  |||||||||| | ||||||||  ||| ||||| |||||||| |||||||||||||| |||||       ||| |  ||| |||||     ||| ||| |  |  | ||||  ||   | ||  |  ||   ||  ||| || ||||
GATGAAAATGGGAACAAGATGATAAATGAGTATATTCGTGAGTATAAGATTGGTTCTGGTAGCTATGGGAAAGTGgtgagtgt-------aatattcatggtacata----tcctgtctcaat-aaaaacaattttcctgagcctcttt-ccttacatgcatgacag