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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGAAAGAAGAGGCACAACAACTGGCGATGGTATTCCAAACCGTTGGTGCTTTCAAGGTTAAACGCAAAGGCGGTAAAGGCAAACTGATATTTGGATCgtaagtcctacttaagcaaatctagattttaacagtcttgagaatagtgtttagcctgtacttaactttatattttcctgcag

Basic information

species Arabidopsis thaliana
transcript AT3G44890.1
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125004783|gb|EL077052.1|EL077052
EST:     AAAGGCGGTAAAGGCAAACTGATATTTGGATC                         TGTCACAGCTCAAGACCTCGTCGACATCATCAAATCACAGCTCCAAAA
genomic: AAAGGCGGTAAAGGCAAACTGATATTTGGATCgtaagtccta ... tttcctgcagTGTCACAGCTCAAGACCTCGTCGACATCATCAAATCACAGCTCCAAAA
EST: gi|124816738|gb|EH901604.1|EH901604
EST:     GCTTTCAAGGTTAAACGCAAAGGCGGTAAAGGCAAACTGATATTTGGATC                         TGTCACAGCTCAAGACCTCGTCGACATCATCAAA
genomic: GCTTTCAAGGTTAAACGCAAAGGCGGTAAAGGCAAACTGATATTTGGATCgtaagtccta ... tttcctgcagTGTCACAGCTCAAGACCTCGTCGACATCATCAAA
EST: gi|124755045|gb|EH845175.1|EH845175
EST:     GCTTTCAAGGTTAAACGCAAAGGCGGTAAAGGCAAACTGATATTTGGATC                         TGTCACAGCTCAAGA
genomic: GCTTTCAAGGTTAAACGCAAAGGCGGTAAAGGCAAACTGATATTTGGATCgtaagtccta ... tttcctgcagTGTCACAGCTCAAGA
EST: gi|125122904|gb|EL169353.1|EL169353
EST:     GCTTTCAAGGTTAAACGCAAAGGCGGTAAAGGCAAACTGATATTTGGATC                         CGTCACAGCTCAAGACCTC
genomic: GCTTTCAAGGTTAAACGCAAAGGCGGTAAAGGCAAACTGATATTTGGATCgtaagtccta ... tttcctgcagTGTCACAGCTCAAGACCTC
EST: gi|124866086|gb|EH950523.1|EH950523
EST:     AAAGGCGGTAAAGGCAAACTGATATTTGGATC                         T
genomic: AAAGGCGGTAAAGGCAAACTGATATTTGGATCgtaagtccta ... tttcctgcag-
EST: gi|124866086|gb|EH950523.1|EH950523
EST:     AAAGGCGGTAAAGGCAAACTGATATTTGGATC                         T
genomic: AAAGGCGGTAAAGGCAAACTGATATTTGGATCgtaagtccta ... tttcctgcag-
EST: gi|163997582|gb|EL996183.1|EL996183
EST:     GCTTTCAAGGTTAAACGCAAAGGCGGTAAAGGCAAACTGATATTTGGATC                         TGTCACAGCTCAAGACCTCGT
genomic: GCTTTCAAGGTTAAACGCAAAGGCGGTAAAGGCAAACTGATATTTGGATCgtaagtccta ... tttcctgcagTGTCACAGCTCAAGACCTCGT
EST: gi|124928859|gb|EL006462.1|EL006462
EST:     GCTTTCAAGGTTAAACGCAAAGGCGGTAAAGGCAAACTGATATTTGGATC                         TGTCACAGCTCAAGACCTC
genomic: GCTTTCAAGGTTAAACGCAAAGGCGGTAAAGGCAAACTGATATTTGGATCgtaagtccta ... tttcctgcagTGTCACAGCTCAAGACCTC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTGAAAGAAGAGGCACAACAACTGGCGATGGTATTCCAAACCGTTGGTGCTTTCAAGGTTAAACGCAAAGGCGGTAAAGGCAAACTGATATTTGGATCgtaagtcctacttaagcaaatctagattttaacagtcttgagaatagtgtttagcctgtacttaactttatattttcctgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG