1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
TGCAGTGCAGCAGCAGGGCCTATCGGGAGAGTGTTGGAGGCTGACCTTCGAGCTGGTGACAAAGGCTCTGGTGTCTGCTATACTTACAGCCGCAGCAAAGgttttccccatctcaacttcatgccttaagttttctctttatctataatttggccagactcgtagctcaataatacagaggaagttgaaatgtaaatctataacctgagagaagttgttgtgttgtgtgaacag
species | Arabidopsis thaliana |
transcript | AT3G43230.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: AGCTGGTGACAAAGGCTCTGGTGTCTGCTATACTTACAGCCGCAGCAAAG GGGCATTTGTGGGAGTATCTCTAGAAGGAAATCTGGTGGCAACAAGAAGGGEST: gi|125251255|gb|EL265340.1|EL265340
genomic: AGCTGGTGACAAAGGCTCTGGTGTCTGCTATACTTACAGCCGCAGCAAAGgttttcccca ... gtgtgaacagGGGCATTTGTGGGAGTATCTCTAGAAGGAAATCTGGTGGCAACAAGAAGGG
EST: TGACAAAGGCTCTGGTGTCTGCTATTACTTACAGCCGCAGCAAAG GGGCATTTGTTGGGAGTATCTCTAGAAGGAAATCTGGTGGCAACAAGAAGG
genomic: TGACAAAGGCTCTGGTGTCTGCTA-TACTTACAGCCGCAGCAAAGgttttcccca ... gtgtgaacagGGGCATTTG-TGGGAGTATCTCTAGAAGGAAATCTGGTGGCAACAAGAAGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGCAGTGCAGCAGCAGGGCCTATCGGGAGAGTGTTGGAGGCTGACCTTCGAGCTGGTGACAAAGGCTCTGGTGTCTGCTATACTTACAGCCGCAGCAAAGgttttccccatctcaacttcatgccttaagttttctctttatctataatttggccagactcgtagctcaataatacagaggaagttgaaatgtaaatctataacctgagagaagttgttgtgttgtgtgaacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG