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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGGACCGTGTGTCTTTGGGAGCAAATGGGAAGGCCAGAGAGGGTTAATCTTGTTGAGCTAGGTCCAGGTCGGGGAACACTCATGGCCGATCTCCTTCGTgtatgtatttatgctcttgtatccttgacagttctagttccgttccataacctcgatgatctcattactgaatactaaaacctttgacttgtag

Basic information

species Arabidopsis thaliana
transcript AT3G28700.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G28700.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GRMZM2G086052_T02 (Zea mays), 5'ss of exon 4
TTGGACCGTGTGTCTTTGGGAGCAAATGGGAAGGCCAGAGAGGGTTAATCTTGTTGAGCTAGGTCCAGGTCGGGGAACACTCATGGCCGATCTCCTTCGTgtatgtatttatgctcttgtatccttgacagttctagttccgttccataacctcgatgatctcattactgaatactaaaacctttgacttgtag
 ||| |  |||| || |||||||||||||||| ||||| || ||| |||||  ||||||| || ||||| || ||||||||| |||| ||| | ||| | || ||| ||  ||||   || |  |    | ||  |||| |  |   |       |    ||  ||| || ||     |   |||||   |   
ATGGGCAATGTGCCTCTGGGAGCAAATGGGAAAGCCAGCGAAGGTGAATCTGATTGAGCTTGGCCCAGGACGAGGAACACTCTTGGCTGATTTACTTAGGgtgtgttttattgctagcgtctgttatgta-tttaagttacactgtgttgttctta----cttcttagtggatgtctta---tttgaacag---

upper sequence: AT3G28700.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA11G10540.1 (Glycine max), 5'ss of exon 4
TTGGACCGTGTGTCTTTGGGAGCAAATGGGAAGGCCAGAGAGGGTTAATCTTGTTGAGCTAGGTCCAGGTCGGGGAACACTCATGGCCGATCTCCTTCGTgtatg---tatttatgctcttgtatccttg---acagttctagttccgttccataacctcgatgatctcattactgaatactaaaacctt-tgacttgtag-----------------------
 |||    ||||||||||||||||||||||    ||| |  | || ||||| |||||||| || || || || ||||| |||||||||||||||||||| |||||   |  || |   |||| ||   ||   | |  | |  |    ||  | |  ||| |     |    ||     || | | | || | ||  |                          
CTGGGTGATGTGTCTTTGGGAGCAAATGGGCCAACCACAAGGAGTAAATCTAGTTGAGCTTGGCCCGGGGCGAGGAACTCTCATGGCCGATCTCCTTCGCgtatgatatgcttttatgcttgaatttctgtttaaaccttttttctttttttacattctcaactgcatatagacaaggcaccatatcattgttacaagggaacacagtttttaatttcttatag