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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGATGAACTTCTGCAAATGTCTCGTTCATGGGATATCGTAGgtcagatttctcctgccatttcctgtttttggcaattataatataacacttggaatattgaactccttctgtctgcttttttgaatctttgaatctttgtag

Basic information

species Arabidopsis thaliana
transcript AT3G27740.2
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124711160|gb|EH802562.1|EH802562
EST:     GATGATGAACTTCTGCAAATGTCTCGTTCATGGGATATCGTAG                         GTATTGATCTAATAAGTGATGTTTCATGTAAATCTCCCTAT
genomic: GATGATGAACTTCTGCAAATGTCTCGTTCATGGGATATCGTAGgtcagatttc ... atctttgtagGTATTGATCTAATAAGTGATGTTTCATGTAAATCTCCCTAT
EST: gi|47830985|gb|CK120669.1|CK120669
EST:     GATGATGAACTTCTGCAAATGTCTCGTTCATGGGATATCGTAG                         GTATTGATCTAATAAGTGATGTTTCATGTAAATCTCCCTATGAATGGGTTG
genomic: GATGATGAACTTCTGCAAATGTCTCGTTCATGGGATATCGTAGgtcagatttc ... atctttgtagGTATTGATCTAATAAGTGATGTTTCATGTAAATCTCCCTATGAATGGGTTG